-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_15/scaffold_15_5216384-5421526

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_15-snap.1150-T1
Valid prediction for GlimmerHMM_glimmerT_36150-T1
Valid prediction for GlimmerHMM_glimmerT_36152-T1
Valid prediction for pasa_asmbl_15200.p1
Valid prediction for snap_scaffold_15-snap.1166-T1
Valid prediction for snap_scaffold_15-snap.1152-T1
Valid prediction for GlimmerHMM_glimmerT_36163-T1
Valid prediction for GlimmerHMM_glimmerT_36159-T1
Valid prediction for snap_scaffold_15-snap.1169-T1
Valid prediction for Augustus_model.g24108.t1
Valid prediction for GlimmerHMM_glimmerT_36175-T1
Couldn't classify 14797, 15366
Sorry, prediction pasa_asmbl_15195.p1 fails validation.
(GGT)	 CT	14797-15366	AC	AAA
Valid prediction for GlimmerHMM_glimmerT_36160-T1
Valid prediction for Augustus_model.g24101.t1
Valid prediction for GlimmerHMM_glimmerT_36156-T1
Valid prediction for snap_scaffold_15-snap.1151-T1
Valid prediction for snap_scaffold_15-snap.1155-T1
Valid prediction for snap_scaffold_15-snap.1134-T1
Valid prediction for Augustus_model.g24106.t1
Valid prediction for snap_scaffold_15-snap.1137-T1
Valid prediction for snap_scaffold_15-snap.1143-T1
Valid prediction for CodingQuarry_transcript_18007-T1
Valid prediction for snap_scaffold_15-snap.1158-T1
Valid prediction for snap_scaffold_15-snap.1130-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for snap_scaffold_15-snap.1145-T1
Valid prediction for snap_scaffold_15-snap.1164-T1
Valid prediction for GlimmerHMM_glimmerT_36155-T1
Valid prediction for CodingQuarry_transcript_18003-T1
Valid prediction for CodingQuarry_transcript_18006-T1
Valid prediction for snap_scaffold_15-snap.1125-T1
Valid prediction for snap_scaffold_15-snap.1159-T1
Valid prediction for snap_scaffold_15-snap.1154-T1
Valid prediction for snap_scaffold_15-snap.1132-T1
Valid prediction for GlimmerHMM_glimmerT_36173-T1
Valid prediction for GlimmerHMM_glimmerT_36142-T1
Valid prediction for snap_scaffold_15-snap.1140-T1
Valid prediction for GlimmerHMM_glimmerT_36146-T1
Valid prediction for CodingQuarry_transcript_18005-T1
Valid prediction for snap_scaffold_15-snap.1138-T1
Valid prediction for snap_scaffold_15-snap.1142-T1
Valid prediction for snap_scaffold_15-snap.1167-T1
Valid prediction for snap_scaffold_15-snap.1127-T1
Valid prediction for snap_scaffold_15-snap.1131-T1
Valid prediction for snap_scaffold_15-snap.1129-T1
Valid prediction for GlimmerHMM_glimmerT_36166-T1
Valid prediction for snap_scaffold_15-snap.1157-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_36143-T1
Valid prediction for GlimmerHMM_glimmerT_36174-T1
Valid prediction for Augustus_model.g24107.t1
Valid prediction for GlimmerHMM_glimmerT_36157-T1
Valid prediction for GlimmerHMM_glimmerT_36149-T1
Valid prediction for Augustus_model.g24100.t1
Valid prediction for snap_scaffold_15-snap.1162-T1
Valid prediction for snap_scaffold_15-snap.1161-T1
Valid prediction for GlimmerHMM_glimmerT_36151-T1
Valid prediction for snap_scaffold_15-snap.1128-T1
Couldn't classify 11996, 12100
Couldn't classify 38836, 38966
Sorry, prediction pasa_asmbl_14204.p1 fails validation.
(TAT)	 AG	11996-12100	GT	GGG
(AGT)	 AG	13308-13328	GT	GGG
(GCT)	 AG	15663-15737	GT	TGG
(TAC)	 AG	16041-16119	GT	AGG
(GAG)	 AG	16557-16669	GT	TGG
(CAC)	 AG	18009-18202	GT	AGG
(GAT)	 AG	18662-18736	GT	AGG
(CTG)	 AG	19558-19714	GT	AGG
(GAG)	 AG	20667-20831	GT	GGG
(GCC)	 AG	21629-21750	GT	AGG
(GGG)	 AG	21852-22032	GT	AGG
(GGC)	 AG	22314-22449	GT	GGG
(CTT)	 AG	23603-23698	GT	AGG
(GAA)	 AG	23819-23937	GT	AGG
(ATC)	 AG	24857-24990	GT	AGG
(TAT)	 AG	25241-25482	GT	AGG
(GCC)	 AG	26744-26936	GT	AAG
(GGT)	 AG	27268-27484	GT	AGG
(ACT)	 AG	27627-27731	GT	AGG
(GTT)	 AG	29128-29231	GT	AAG
(AAC)	 AG	29802-29885	GT	GAG
(CTA)	 AG	30535-30694	GT	AGG
(GAT)	 AG	30874-31018	GT	GGG
(CCT)	 AG	31150-31355	GT	GGG
(GGT)	 AG	31497-31671	GT	CGG
(GGT)	 AG	31927-32135	GT	AGG
(GTG)	 AG	32462-32625	GT	AGG
(TCA)	 AG	32768-32816	GT	GGG
(TAC)	 AG	33083-33243	GC	AGG
(TGT)	 AG	34443-34599	GT	AGG
(GTG)	 AG	35324-35410	GT	AGG
(GAC)	 AG	35610-35836	GT	AGG
(GTG)	 AG	36051-36263	GT	AGG
(CAT)	 AG	36394-37000	GT	AGG
(ATG)	 AG	37103-37303	GT	AGG
(ATT)	 AG	38553-38655	GT	CGG
(GCA)	 AG	38836-38966	AG	CCA
-recovered pasa_asmbl_14204.p1, initial, 37103, 37303
add_exon() Sorry, pasa_asmbl_14204.p1 16041-16119-terminal-3 is invalid.
-recovered pasa_asmbl_14204.p1, terminal, 16041, 16119
-recovered pasa_asmbl_14204.p1, internal, 11996, 12100
-recovered pasa_asmbl_14204.p1, internal, 13308, 13328
-recovered pasa_asmbl_14204.p1, internal, 15663, 15737
-recovered pasa_asmbl_14204.p1, internal, 16041, 16119
-recovered pasa_asmbl_14204.p1, internal, 16557, 16669
-recovered pasa_asmbl_14204.p1, internal, 18009, 18202
-recovered pasa_asmbl_14204.p1, internal, 18662, 18736
-recovered pasa_asmbl_14204.p1, internal, 19558, 19714
-recovered pasa_asmbl_14204.p1, internal, 20667, 20831
-recovered pasa_asmbl_14204.p1, internal, 21629, 21750
-recovered pasa_asmbl_14204.p1, internal, 21852, 22032
-recovered pasa_asmbl_14204.p1, internal, 22314, 22449
-recovered pasa_asmbl_14204.p1, internal, 23603, 23698
-recovered pasa_asmbl_14204.p1, internal, 23819, 23937
-recovered pasa_asmbl_14204.p1, internal, 24857, 24990
-recovered pasa_asmbl_14204.p1, internal, 25241, 25482
-recovered pasa_asmbl_14204.p1, internal, 26744, 26936
-recovered pasa_asmbl_14204.p1, internal, 27268, 27484
-recovered pasa_asmbl_14204.p1, internal, 27627, 27731
-recovered pasa_asmbl_14204.p1, internal, 29128, 29231
-recovered pasa_asmbl_14204.p1, internal, 29802, 29885
-recovered pasa_asmbl_14204.p1, internal, 30535, 30694
-recovered pasa_asmbl_14204.p1, internal, 30874, 31018
-recovered pasa_asmbl_14204.p1, internal, 31150, 31355
-recovered pasa_asmbl_14204.p1, internal, 31497, 31671
-recovered pasa_asmbl_14204.p1, internal, 31927, 32135
-recovered pasa_asmbl_14204.p1, internal, 32462, 32625
-recovered pasa_asmbl_14204.p1, internal, 32768, 32816
-recovered pasa_asmbl_14204.p1, internal, 33083, 33243
-recovered pasa_asmbl_14204.p1, internal, 34443, 34599
-recovered pasa_asmbl_14204.p1, internal, 35324, 35410
-recovered pasa_asmbl_14204.p1, internal, 35610, 35836
-recovered pasa_asmbl_14204.p1, internal, 36051, 36263
-recovered pasa_asmbl_14204.p1, internal, 36394, 37000
-recovered pasa_asmbl_14204.p1, internal, 37103, 37303
-recovered pasa_asmbl_14204.p1, internal, 38553, 38655
Valid prediction for GlimmerHMM_glimmerT_36158-T1
Valid prediction for snap_scaffold_15-snap.1147-T1
Valid prediction for GlimmerHMM_glimmerT_36164-T1
Valid prediction for GlimmerHMM_glimmerT_36165-T1
Valid prediction for snap_scaffold_15-snap.1165-T1
Valid prediction for snap_scaffold_15-snap.1156-T1
Valid prediction for HiQ_model.g24109.t1
Valid prediction for GlimmerHMM_glimmerT_36171-T1
Valid prediction for snap_scaffold_15-snap.1146-T1
Valid prediction for snap_scaffold_15-snap.1135-T1
Valid prediction for snap_scaffold_15-snap.1153-T1
Valid prediction for snap_scaffold_15-snap.1126-T1
Valid prediction for snap_scaffold_15-snap.1160-T1
Valid prediction for GlimmerHMM_glimmerT_36161-T1
Valid prediction for GlimmerHMM_glimmerT_36172-T1
Valid prediction for CodingQuarry_transcript_18002-T1
Valid prediction for GlimmerHMM_glimmerT_36147-T1
Valid prediction for snap_scaffold_15-snap.1136-T1
Valid prediction for snap_scaffold_15-snap.1149-T1
Valid prediction for GlimmerHMM_glimmerT_36145-T1
Valid prediction for snap_scaffold_15-snap.1139-T1
Valid prediction for snap_scaffold_15-snap.1148-T1
Valid prediction for snap_scaffold_15-snap.1168-T1
Couldn't classify 101932, 102194
Sorry, prediction pasa_asmbl_14195.p1 fails validation.
(ATG)	 CA	97127-97134	GT	TTG
(TCC)	 AG	98067-98237	GT	AGG
(GAT)	 AG	98756-98822	GT	AGG
(AAC)	 AG	98924-99005	GT	AGG
(GTG)	 AG	99117-99226	GT	GGG
(GCT)	 AG	99361-99414	GT	AGG
(ATT)	 AG	99571-99682	GT	TGG
(GTT)	 AG	99922-100011	GT	ACG
(GAC)	 AG	100918-101056	GT	TGG
(GGA)	 AG	101204-101276	GT	GGG
(GTG)	 AG	101415-101535	GT	GGG
(GCC)	 AG	101932-102194	AA	TCA
-recovered pasa_asmbl_14195.p1, initial, 97127, 97134
-recovered pasa_asmbl_14195.p1, internal, 98067, 98237
-recovered pasa_asmbl_14195.p1, internal, 98756, 98822
-recovered pasa_asmbl_14195.p1, internal, 98924, 99005
-recovered pasa_asmbl_14195.p1, internal, 99117, 99226
-recovered pasa_asmbl_14195.p1, internal, 99361, 99414
-recovered pasa_asmbl_14195.p1, internal, 99571, 99682
-recovered pasa_asmbl_14195.p1, internal, 99922, 100011
-recovered pasa_asmbl_14195.p1, internal, 100918, 101056
-recovered pasa_asmbl_14195.p1, internal, 101204, 101276
-recovered pasa_asmbl_14195.p1, internal, 101415, 101535
Valid prediction for GlimmerHMM_glimmerT_36148-T1
Valid prediction for GlimmerHMM_glimmerT_36153-T1
Valid prediction for Augustus_model.g24105.t1
Valid prediction for GlimmerHMM_glimmerT_36144-T1
Valid prediction for GlimmerHMM_glimmerT_36167-T1
Valid prediction for pasa_asmbl_14203.p1
Valid prediction for Augustus_model.g24102.t1
Valid prediction for snap_scaffold_15-snap.1163-T1
Valid prediction for Augustus_model.g24103.t1
Valid prediction for GlimmerHMM_glimmerT_36154-T1
Valid prediction for Augustus_model.g24104.t1
Valid prediction for snap_scaffold_15-snap.1133-T1
Valid prediction for GlimmerHMM_glimmerT_36168-T1
Valid prediction for GlimmerHMM_glimmerT_36170-T1
Valid prediction for snap_scaffold_15-snap.1144-T1
Valid prediction for GlimmerHMM_glimmerT_36169-T1
Valid prediction for snap_scaffold_15-snap.1141-T1
Valid prediction for GlimmerHMM_glimmerT_36162-T1
Valid prediction for pasa_asmbl_14196.p1
Valid prediction for Augustus_model.g24110.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 10667, rend_intergenic: 10050  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33543, rend_intergenic: 29394  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37866, rend_intergenic: 35184  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38684, rend_intergenic: 38059  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51319, rend_intergenic: 48100  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 60260, rend_intergenic: 54096  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68840, rend_intergenic: 62957  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142141, rend_intergenic: 133653  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143266, rend_intergenic: 142168  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160444, rend_intergenic: 147045  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 169886, rend_intergenic: 160621  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 188691, rend_intergenic: 179889  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 199595, rend_intergenic: 191746  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 200952, rend_intergenic: 199814  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 202812, rend_intergenic: 201663  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 205143
-exon list size: 500


building trellis

0.2    
0.4    
0.6    
0.8    
1.0    
1.2    
1.4    
1.6    
1.8    
2.0    
2.2    
2.4    
2.6    
2.8    
3.0    
3.2    
3.4    
3.6    
3.8    
4.0    
4.2    
4.4    
4.6    
4.8    
5.0    
5.2    
5.4    
5.6    
5.8    
6.0    
6.2    
6.4    
6.6    
6.8    
7.0    
7.2    
7.4    
7.6    
7.8    
8.0    
8.2    
8.4    
8.6    
8.8    
9.0    
9.2    
9.4    
9.6    
9.8    
10.0    
10.2    
10.4    
10.6    
10.8    
11.0    
11.2    
11.4    
11.6    
11.8    
12.0    
12.2    
12.4    
12.5    
12.7    
12.9    
13.1    
13.3    
13.5    
13.7    
13.9    
14.1    
14.3    
14.5    
14.7    
14.9    
15.1    
15.3    
15.5    
15.7    
15.9    
16.1    
16.3    
16.5    
16.7    
16.9    
17.1    
17.3    
17.5    
17.7    
17.9    
18.1    
18.3    
18.5    
18.7    
18.9    
19.1    
19.3    
19.5    
19.7    
19.9    
20.1    
20.3    
20.5    
20.7    
20.9    
21.1    
21.3    
21.5    
21.7    
21.9    
22.1    
22.3    
22.5    
22.7    
22.9    
23.1    
23.3    
23.5    
23.7    
23.9    
24.1    
24.3    
24.5    
24.7    
24.9    
25.1    
25.3    
25.5    
25.7    
25.9    
26.1    
26.3    
26.5    
26.7    
26.9    
27.1    
27.3    
27.5    
27.7    
27.9    
28.1    
28.3    
28.5    
28.7    
28.9    
29.1    
29.3    
29.5    
29.7    
29.9    
30.1    
30.3    
30.5    
30.7    
30.9    
31.1    
31.3    
31.5    
31.7    
31.9    
32.1    
32.3    
32.5    
32.7    
32.9    
33.1    
33.3    
33.5    
33.7    
33.9    
34.1    
34.3    
34.5    
34.7    
34.9    
35.1    
35.3    
35.5    
35.7    
35.9    
36.1    
36.3    
36.5    
36.7    
36.9    
37.1    
37.3    
37.5    
37.6    
37.8    
38.0    
38.2    
38.4    
38.6    
38.8    
39.0    
39.2    
39.4    
39.6    
39.8    
40.0    
40.2    
40.4    
40.6    
40.8    
41.0    
41.2    
41.4    
41.6    
41.8    
42.0    
42.2    
42.4    
42.6    
42.8    
43.0    
43.2    
43.4    
43.6    
43.8    
44.0    
44.2    
44.4    
44.6    
44.8    
45.0    
45.2    
45.4    
45.6    
45.8    
46.0    
46.2    
46.4    
46.6    
46.8    
47.0    
47.2    
47.4    
47.6    
47.8    
48.0    
48.2    
48.4    
48.6    
48.8    
49.0    
49.2    
49.4    
49.6    
49.8    
50.0    
50.2    
50.4    
50.6    
50.8    
51.0    
51.2    
51.4    
51.6    
51.8    
52.0    
52.2    
52.4    
52.6    
52.8    
53.0    
53.2    
53.4    
53.6    
53.8    
54.0    
54.2    
54.4    
54.6    
54.8    
55.0    
55.2    
55.4    
55.6    
55.8    
56.0    
56.2    
56.4    
56.6    
56.8    
57.0    
57.2    
57.4    
57.6    
57.8    
58.0    
58.2    
58.4    
58.6    
58.8    
59.0    
59.2    
59.4    
59.6    
59.8    
60.0    
60.2    
60.4    
60.6    
60.8    
61.0    
61.2    
61.4    
61.6    
61.8    
62.0    
62.2    
62.4    
62.5    
62.7    
62.9    
63.1    
63.3    
63.5    
63.7    
63.9    
64.1    
64.3    
64.5    
64.7    
64.9    
65.1    
65.3    
65.5    
65.7    
65.9    
66.1    
66.3    
66.5    
66.7    
66.9    
67.1    
67.3    
67.5    
67.7    
67.9    
68.1    
68.3    
68.5    
68.7    
68.9    
69.1    
69.3    
69.5    
69.7    
69.9    
70.1    
70.3    
70.5    
70.7    
70.9    
71.1    
71.3    
71.5    
71.7    
71.9    
72.1    
72.3    
72.5    
72.7    
72.9    
73.1    
73.3    
73.5    
73.7    
73.9    
74.1    
74.3    
74.5    
74.7    
74.9    
75.1    
75.3    
75.5    
75.7    
75.9    
76.1    
76.3    
76.5    
76.7    
76.9    
77.1    
77.3    
77.5    
77.7    
77.9    
78.1    
78.3    
78.5    
78.7    
78.9    
79.1    
79.3    
79.5    
79.7    
79.9    
80.1    
80.3    
80.5    
80.7    
80.9    
81.1    
81.3    
81.5    
81.7    
81.9    
82.1    
82.3    
82.5    
82.7    
82.9    
83.1    
83.3    
83.5    
83.7    
83.9    
84.1    
84.3    
84.5    
84.7    
84.9    
85.1    
85.3    
85.5    
85.7    
85.9    
86.1    
86.3    
86.5    
86.7    
86.9    
87.1    
87.3    
87.5    
87.6    
87.8    
88.0    
88.2    
88.4    
88.6    
88.8    
89.0    
89.2    
89.4    
89.6    
89.8    
90.0    
90.2    
90.4    
90.6    
90.8    
91.0    
91.2    
91.4    
91.6    
91.8    
92.0    
92.2    
92.4    
92.6    
92.8    
93.0    
93.2    
93.4    
93.6    
93.8    
94.0    
94.2    
94.4    
94.6    
94.8    
95.0    
95.2    
95.4    
95.6    
95.8    
96.0    
96.2    
96.4    
96.6    
96.8    
97.0    
97.2    
97.4    
97.6    
97.8    
98.0    
98.2    
98.4    
98.6    
98.8    
99.0    
99.2    
99.4    
99.6    
99.8    
-found 28 predictions from path traversal
Error with prediction: snap lend_intergenic: 10667, rend_intergenic: 10050  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33543, rend_intergenic: 29394  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37866, rend_intergenic: 35184  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38684, rend_intergenic: 38059  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51319, rend_intergenic: 48100  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 60260, rend_intergenic: 54096  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68840, rend_intergenic: 62957  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142141, rend_intergenic: 133653  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143266, rend_intergenic: 142168  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160444, rend_intergenic: 147045  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 169886, rend_intergenic: 160621  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 188691, rend_intergenic: 179889  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 199595, rend_intergenic: 191746  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 200952, rend_intergenic: 199814  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 202812, rend_intergenic: 201663  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 16 predictions persist after filtering for low support