-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_15/scaffold_15_16010308-16215430

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_15-snap.3167-T1
Valid prediction for GlimmerHMM_glimmerT_37581-T1
Valid prediction for GlimmerHMM_glimmerT_37580-T1
Valid prediction for snap_scaffold_15-snap.3172-T1
Valid prediction for GlimmerHMM_glimmerT_37594-T1
Valid prediction for snap_scaffold_15-snap.3176-T1
Valid prediction for snap_scaffold_15-snap.3181-T1
Valid prediction for snap_scaffold_15-snap.3174-T1
Valid prediction for GlimmerHMM_glimmerT_37606-T1
Valid prediction for snap_scaffold_15-snap.3166-T1
Valid prediction for GlimmerHMM_glimmerT_37583-T1
Valid prediction for snap_scaffold_15-snap.3173-T1
Valid prediction for snap_scaffold_15-snap.3161-T1
Valid prediction for snap_scaffold_15-snap.3185-T1
Valid prediction for snap_scaffold_15-snap.3175-T1
Valid prediction for GlimmerHMM_glimmerT_37588-T1
Valid prediction for GlimmerHMM_glimmerT_37584-T1
Valid prediction for GlimmerHMM_glimmerT_37586-T1
Valid prediction for GlimmerHMM_glimmerT_37601-T1
Valid prediction for snap_scaffold_15-snap.3162-T1
Valid prediction for GlimmerHMM_glimmerT_37602-T1
Valid prediction for snap_scaffold_15-snap.3160-T1
Valid prediction for snap_scaffold_15-snap.3163-T1
Valid prediction for GlimmerHMM_glimmerT_37596-T1
Valid prediction for GlimmerHMM_glimmerT_37593-T1
Valid prediction for GlimmerHMM_glimmerT_37589-T1
Valid prediction for GlimmerHMM_glimmerT_37600-T1
Valid prediction for snap_scaffold_15-snap.3171-T1
Valid prediction for GlimmerHMM_glimmerT_37582-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_37604-T1
Valid prediction for GlimmerHMM_glimmerT_37598-T1
Valid prediction for GlimmerHMM_glimmerT_37607-T1
Valid prediction for GlimmerHMM_glimmerT_37591-T1
Valid prediction for GlimmerHMM_glimmerT_37585-T1
Valid prediction for snap_scaffold_15-snap.3177-T1
Valid prediction for GlimmerHMM_glimmerT_37595-T1
Valid prediction for GlimmerHMM_glimmerT_37605-T1
Valid prediction for GlimmerHMM_glimmerT_37587-T1
Valid prediction for snap_scaffold_15-snap.3183-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for snap_scaffold_15-snap.3182-T1
Valid prediction for snap_scaffold_15-snap.3159-T1
Valid prediction for GlimmerHMM_glimmerT_37599-T1
Valid prediction for GlimmerHMM_glimmerT_37597-T1
Valid prediction for GlimmerHMM_glimmerT_37592-T1
Valid prediction for snap_scaffold_15-snap.3164-T1
Valid prediction for snap_scaffold_15-snap.3169-T1
Valid prediction for snap_scaffold_15-snap.3165-T1
Valid prediction for GlimmerHMM_glimmerT_37590-T1
Valid prediction for snap_scaffold_15-snap.3179-T1
Valid prediction for snap_scaffold_15-snap.3180-T1
Valid prediction for GlimmerHMM_glimmerT_37603-T1
Valid prediction for snap_scaffold_15-snap.3184-T1
Valid prediction for snap_scaffold_15-snap.3168-T1
Valid prediction for snap_scaffold_15-snap.3186-T1
Valid prediction for snap_scaffold_15-snap.3170-T1
Valid prediction for snap_scaffold_15-snap.3178-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: GlimmerHMM lend_intergenic: 138720, rend_intergenic: 138717  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82647, rend_intergenic: 81041  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 205123
-exon list size: 161


building trellis

0.6    
1.2    
1.8    
2.5    
3.1    
3.7    
4.3    
4.9    
5.5    
6.1    
6.7    
7.4    
8.0    
8.6    
9.2    
9.8    
10.4    
11.0    
11.7    
12.3    
12.9    
13.5    
14.1    
14.7    
15.3    
16.0    
16.6    
17.2    
17.8    
18.4    
19.0    
19.6    
20.2    
20.9    
21.5    
22.1    
22.7    
23.3    
23.9    
24.5    
25.2    
25.8    
26.4    
27.0    
27.6    
28.2    
28.8    
29.4    
30.1    
30.7    
31.3    
31.9    
32.5    
33.1    
33.7    
34.4    
35.0    
35.6    
36.2    
36.8    
37.4    
38.0    
38.7    
39.3    
39.9    
40.5    
41.1    
41.7    
42.3    
42.9    
43.6    
44.2    
44.8    
45.4    
46.0    
46.6    
47.2    
47.9    
48.5    
49.1    
49.7    
50.3    
50.9    
51.5    
52.1    
52.8    
53.4    
54.0    
54.6    
55.2    
55.8    
56.4    
57.1    
57.7    
58.3    
58.9    
59.5    
60.1    
60.7    
61.3    
62.0    
62.6    
63.2    
63.8    
64.4    
65.0    
65.6    
66.3    
66.9    
67.5    
68.1    
68.7    
69.3    
69.9    
70.6    
71.2    
71.8    
72.4    
73.0    
73.6    
74.2    
74.8    
75.5    
76.1    
76.7    
77.3    
77.9    
78.5    
79.1    
79.8    
80.4    
81.0    
81.6    
82.2    
82.8    
83.4    
84.0    
84.7    
85.3    
85.9    
86.5    
87.1    
87.7    
88.3    
89.0    
89.6    
90.2    
90.8    
91.4    
92.0    
92.6    
93.3    
93.9    
94.5    
95.1    
95.7    
96.3    
96.9    
97.5    
98.2    
98.8    
99.4    
-found 28 predictions from path traversal
Error with prediction: GlimmerHMM lend_intergenic: 138720, rend_intergenic: 138717  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82647, rend_intergenic: 81041  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 23 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 20045
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 7634 - 20045
-exon list size: 3


building trellis

20.0    
40.0    
60.0    
80.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support