-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_15/scaffold_15_14772606-15064196

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g24958.t1
Valid prediction for snap_scaffold_15-snap.2955-T1
Valid prediction for snap_scaffold_15-snap.2969-T1
Valid prediction for GlimmerHMM_glimmerT_37430-T1
Valid prediction for GlimmerHMM_glimmerT_37435-T1
Valid prediction for GlimmerHMM_glimmerT_37446-T1
Valid prediction for CodingQuarry_transcript_18242-T1
Valid prediction for snap_scaffold_15-snap.2968-T1
Valid prediction for snap_scaffold_15-snap.2967-T1
Valid prediction for CodingQuarry_transcript_18243-T1
Valid prediction for snap_scaffold_15-snap.2982-T1
Valid prediction for GlimmerHMM_glimmerT_37447-T1
Valid prediction for GlimmerHMM_glimmerT_37448-T1
Valid prediction for snap_scaffold_15-snap.2984-T1
Valid prediction for snap_scaffold_15-snap.2978-T1
Valid prediction for Augustus_model.g24951.t1
Valid prediction for snap_scaffold_15-snap.2988-T1
Valid prediction for snap_scaffold_15-snap.2958-T1
Valid prediction for GlimmerHMM_glimmerT_37452-T1
Valid prediction for Augustus_model.g24943.t1
Valid prediction for snap_scaffold_15-snap.2951-T1
Valid prediction for HiQ_model.g24950.t1
Valid prediction for GlimmerHMM_glimmerT_37427-T1
Valid prediction for GlimmerHMM_glimmerT_37454-T1
Valid prediction for GlimmerHMM_glimmerT_37429-T1
Valid prediction for snap_scaffold_15-snap.2953-T1
Valid prediction for Augustus_model.g24942.t1
Valid prediction for snap_scaffold_15-snap.2947-T1
Valid prediction for snap_scaffold_15-snap.2957-T1
Valid prediction for Augustus_model.g24946.t1
Valid prediction for pasa_asmbl_15706.p1
Valid prediction for snap_scaffold_15-snap.2979-T1
Valid prediction for GlimmerHMM_glimmerT_37425-T1
Valid prediction for Augustus_model.g24962.t1
Valid prediction for GlimmerHMM_glimmerT_37421-T1
Valid prediction for Augustus_model.g24963.t1
Valid prediction for snap_scaffold_15-snap.2963-T1
Valid prediction for Augustus_model.g24944.t1
Valid prediction for GlimmerHMM_glimmerT_37449-T1
Valid prediction for snap_scaffold_15-snap.2965-T1
Valid prediction for snap_scaffold_15-snap.2949-T1
Valid prediction for GlimmerHMM_glimmerT_37426-T1
Valid prediction for Augustus_model.g24959.t1
Valid prediction for GlimmerHMM_glimmerT_37422-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for HiQ_model.g24947.t1
Valid prediction for GlimmerHMM_glimmerT_37437-T1
Valid prediction for snap_scaffold_15-snap.2989-T1
Valid prediction for snap_scaffold_15-snap.2971-T1
Valid prediction for snap_scaffold_15-snap.2966-T1
Valid prediction for Augustus_model.g24945.t1
Valid prediction for snap_scaffold_15-snap.2972-T1
Valid prediction for GlimmerHMM_glimmerT_37445-T1
Valid prediction for snap_scaffold_15-snap.2952-T1
Valid prediction for snap_scaffold_15-snap.2961-T1
Valid prediction for snap_scaffold_15-snap.2960-T1
Valid prediction for GlimmerHMM_glimmerT_37444-T1
Valid prediction for GlimmerHMM_glimmerT_37451-T1
Valid prediction for GlimmerHMM_glimmerT_37450-T1
Valid prediction for GlimmerHMM_glimmerT_37428-T1
Valid prediction for Augustus_model.g24953.t1
Valid prediction for snap_scaffold_15-snap.2987-T1
Valid prediction for GlimmerHMM_glimmerT_37443-T1
Valid prediction for Augustus_model.g24941.t1
Valid prediction for snap_scaffold_15-snap.2977-T1
Valid prediction for snap_scaffold_15-snap.2970-T1
Valid prediction for GlimmerHMM_glimmerT_37453-T1
Valid prediction for snap_scaffold_15-snap.2983-T1
Valid prediction for GlimmerHMM_glimmerT_37432-T1
Valid prediction for snap_scaffold_15-snap.2980-T1
Couldn't classify 204405, 204475
Sorry, prediction pasa_asmbl_14748.p1 fails validation.
(GAA)	 AG	204405-204475	GT	AAG
(TTT)	 AG	205209-205313	GT	ATG
(GTT)	 AG	205714-205857	GT	AGG
(GAT)	 AG	206028-206185	GT	CTG
(TTG)	 AG	206358-206434	AT	AAA
-recovered pasa_asmbl_14748.p1, terminal, 206358, 206434
-recovered pasa_asmbl_14748.p1, internal, 204405, 204475
-recovered pasa_asmbl_14748.p1, internal, 205209, 205313
-recovered pasa_asmbl_14748.p1, internal, 205714, 205857
-recovered pasa_asmbl_14748.p1, internal, 206028, 206185
Valid prediction for snap_scaffold_15-snap.2964-T1
Valid prediction for GlimmerHMM_glimmerT_37442-T1
Valid prediction for snap_scaffold_15-snap.2962-T1
Valid prediction for GlimmerHMM_glimmerT_37439-T1
Valid prediction for snap_scaffold_15-snap.2974-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for Augustus_model.g24960.t1
Valid prediction for Augustus_model.g24954.t1
Valid prediction for snap_scaffold_15-snap.2985-T1
Valid prediction for Augustus_model.g24948.t1
Valid prediction for snap_scaffold_15-snap.2954-T1
Valid prediction for Augustus_model.g24961.t1
Valid prediction for GlimmerHMM_glimmerT_37438-T1
Valid prediction for GlimmerHMM_glimmerT_37434-T1
Valid prediction for GlimmerHMM_glimmerT_37424-T1
Valid prediction for snap_scaffold_15-snap.2948-T1
Valid prediction for snap_scaffold_15-snap.2975-T1
Valid prediction for snap_scaffold_15-snap.2959-T1
Valid prediction for snap_scaffold_15-snap.2976-T1
Valid prediction for GlimmerHMM_glimmerT_37423-T1
Valid prediction for Augustus_model.g24956.t1
Valid prediction for snap_scaffold_15-snap.2981-T1
Valid prediction for Augustus_model.g24949.t1
Valid prediction for Augustus_model.g24955.t1
Valid prediction for snap_scaffold_15-snap.2973-T1
Valid prediction for snap_scaffold_15-snap.2956-T1
Valid prediction for GlimmerHMM_glimmerT_37440-T1
Valid prediction for GlimmerHMM_glimmerT_37431-T1
Valid prediction for snap_scaffold_15-snap.2986-T1
Valid prediction for GlimmerHMM_glimmerT_37433-T1
Valid prediction for GlimmerHMM_glimmerT_37436-T1
Valid prediction for Augustus_model.g24952.t1
Valid prediction for Augustus_model.g24957.t1
Valid prediction for snap_scaffold_15-snap.2950-T1
Valid prediction for GlimmerHMM_glimmerT_37441-T1
Couldn't classify 204154, 204214
Sorry, prediction pasa_asmbl_14750.p1 fails validation.
(ATG)	 AA	201433-201552	GT	AGG
(GCA)	 AG	202995-203058	GT	AGG
(AGG)	 AG	203341-203450	GT	ATG
(AAA)	 AG	203660-203776	GT	CAG
(GAA)	 AG	203946-204004	GT	AGG
(GTT)	 AG	204154-204214	CT	AGC
-recovered pasa_asmbl_14750.p1, initial, 201433, 201552
-recovered pasa_asmbl_14750.p1, internal, 202995, 203058
-recovered pasa_asmbl_14750.p1, internal, 203341, 203450
-recovered pasa_asmbl_14750.p1, internal, 203660, 203776
-recovered pasa_asmbl_14750.p1, internal, 203946, 204004

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 23017, rend_intergenic: 17620  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44200, rend_intergenic: 40525  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50831, rend_intergenic: 50019  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101407, rend_intergenic: 99341  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104656, rend_intergenic: 101989  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 259050, rend_intergenic: 256524  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 291591
-exon list size: 358


building trellis

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-found 39 predictions from path traversal
Error with prediction: snap lend_intergenic: 23017, rend_intergenic: 17620  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44200, rend_intergenic: 40525  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50831, rend_intergenic: 50019  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101407, rend_intergenic: 99341  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104656, rend_intergenic: 101989  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 259050, rend_intergenic: 256524  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 31 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 10313
-exon list size: 3


building trellis

20.0    
40.0    
60.0    
80.0    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support