-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_15/scaffold_15_12822307-13026522

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_15-snap.2621-T1
Valid prediction for snap_scaffold_15-snap.2609-T1
Valid prediction for snap_scaffold_15-snap.2623-T1
Valid prediction for snap_scaffold_15-snap.2602-T1
Valid prediction for GlimmerHMM_glimmerT_37193-T1
Valid prediction for Augustus_model.g24756.t1
Valid prediction for Augustus_model.g24765.t1
Valid prediction for GlimmerHMM_glimmerT_37181-T1
Valid prediction for snap_scaffold_15-snap.2627-T1
Valid prediction for snap_scaffold_15-snap.2612-T1
Valid prediction for GlimmerHMM_glimmerT_37187-T1
Valid prediction for snap_scaffold_15-snap.2622-T1
Valid prediction for GlimmerHMM_glimmerT_37182-T1
Valid prediction for GlimmerHMM_glimmerT_37191-T1
Valid prediction for snap_scaffold_15-snap.2610-T1
Valid prediction for GlimmerHMM_glimmerT_37186-T1
Valid prediction for GlimmerHMM_glimmerT_37190-T1
Valid prediction for snap_scaffold_15-snap.2625-T1
Valid prediction for GlimmerHMM_glimmerT_37174-T1
Valid prediction for GlimmerHMM_glimmerT_37183-T1
Valid prediction for snap_scaffold_15-snap.2605-T1
Valid prediction for Augustus_model.g24760.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g24763.t1
Valid prediction for GlimmerHMM_glimmerT_37179-T1
Valid prediction for snap_scaffold_15-snap.2626-T1
Valid prediction for Augustus_model.g24759.t1
Valid prediction for GlimmerHMM_glimmerT_37172-T1
Couldn't classify 154740, 154786
Sorry, prediction pasa_asmbl_14606.p1 fails validation.
(CGC)	 AG	154740-154786	GT	CTG
(TGT)	 AG	155641-155767	GT	TGG
(GTG)	 AG	155861-155993	GT	CGG
(AGT)	 AG	156342-156499	AA	AAA
-recovered pasa_asmbl_14606.p1, terminal, 156342, 156499
-recovered pasa_asmbl_14606.p1, internal, 154740, 154786
-recovered pasa_asmbl_14606.p1, internal, 155641, 155767
-recovered pasa_asmbl_14606.p1, internal, 155861, 155993
Valid prediction for GlimmerHMM_glimmerT_37175-T1
Valid prediction for GlimmerHMM_glimmerT_37177-T1
Valid prediction for snap_scaffold_15-snap.2607-T1
Valid prediction for snap_scaffold_15-snap.2620-T1
Valid prediction for snap_scaffold_15-snap.2603-T1
Valid prediction for snap_scaffold_15-snap.2617-T1
Valid prediction for Augustus_model.g24767.t1
Valid prediction for GlimmerHMM_glimmerT_37176-T1
Valid prediction for HiQ_model.g24761.t1
Valid prediction for snap_scaffold_15-snap.2618-T1
Valid prediction for snap_scaffold_15-snap.2614-T1
Valid prediction for snap_scaffold_15-snap.2615-T1
Valid prediction for snap_scaffold_15-snap.2624-T1
Valid prediction for GlimmerHMM_glimmerT_37192-T1
Valid prediction for Augustus_model.g24757.t1
Valid prediction for snap_scaffold_15-snap.2611-T1
Valid prediction for snap_scaffold_15-snap.2628-T1
Valid prediction for Augustus_model.g24758.t1
Valid prediction for snap_scaffold_15-snap.2619-T1
Valid prediction for snap_scaffold_15-snap.2606-T1
Valid prediction for Augustus_model.g24755.t1
Valid prediction for GlimmerHMM_glimmerT_37180-T1
Valid prediction for snap_scaffold_15-snap.2613-T1
Valid prediction for GlimmerHMM_glimmerT_37184-T1
Valid prediction for Augustus_model.g24766.t1
Valid prediction for snap_scaffold_15-snap.2604-T1
Valid prediction for GlimmerHMM_glimmerT_37178-T1
Valid prediction for snap_scaffold_15-snap.2616-T1
Valid prediction for Augustus_model.g24762.t1
Valid prediction for GlimmerHMM_glimmerT_37173-T1
Valid prediction for GlimmerHMM_glimmerT_37188-T1
Valid prediction for Augustus_model.g24764.t1
Valid prediction for snap_scaffold_15-snap.2608-T1
Valid prediction for GlimmerHMM_glimmerT_37189-T1
Valid prediction for GlimmerHMM_glimmerT_37185-T1
Valid prediction for snap_scaffold_15-snap.2629-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 10015, rend_intergenic: 7331  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97632, rend_intergenic: 94658  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143123, rend_intergenic: 140069  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 154162, rend_intergenic: 153806  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 204216
-exon list size: 169


building trellis

0.6    
1.2    
1.8    
2.3    
2.9    
3.5    
4.1    
4.7    
5.3    
5.8    
6.4    
7.0    
7.6    
8.2    
8.8    
9.4    
9.9    
10.5    
11.1    
11.7    
12.3    
12.9    
13.5    
14.0    
14.6    
15.2    
15.8    
16.4    
17.0    
17.5    
18.1    
18.7    
19.3    
19.9    
20.5    
21.1    
21.6    
22.2    
22.8    
23.4    
24.0    
24.6    
25.1    
25.7    
26.3    
26.9    
27.5    
28.1    
28.7    
29.2    
29.8    
30.4    
31.0    
31.6    
32.2    
32.7    
33.3    
33.9    
34.5    
35.1    
35.7    
36.3    
36.8    
37.4    
38.0    
38.6    
39.2    
39.8    
40.4    
40.9    
41.5    
42.1    
42.7    
43.3    
43.9    
44.4    
45.0    
45.6    
46.2    
46.8    
47.4    
48.0    
48.5    
49.1    
49.7    
50.3    
50.9    
51.5    
52.0    
52.6    
53.2    
53.8    
54.4    
55.0    
55.6    
56.1    
56.7    
57.3    
57.9    
58.5    
59.1    
59.6    
60.2    
60.8    
61.4    
62.0    
62.6    
63.2    
63.7    
64.3    
64.9    
65.5    
66.1    
66.7    
67.3    
67.8    
68.4    
69.0    
69.6    
70.2    
70.8    
71.3    
71.9    
72.5    
73.1    
73.7    
74.3    
74.9    
75.4    
76.0    
76.6    
77.2    
77.8    
78.4    
78.9    
79.5    
80.1    
80.7    
81.3    
81.9    
82.5    
83.0    
83.6    
84.2    
84.8    
85.4    
86.0    
86.5    
87.1    
87.7    
88.3    
88.9    
89.5    
90.1    
90.6    
91.2    
91.8    
92.4    
93.0    
93.6    
94.2    
94.7    
95.3    
95.9    
96.5    
97.1    
97.7    
98.2    
98.8    
99.4    
-found 26 predictions from path traversal
Error with prediction: snap lend_intergenic: 10015, rend_intergenic: 7331  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97632, rend_intergenic: 94658  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143123, rend_intergenic: 140069  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 154162, rend_intergenic: 153806  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 17 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 186429 - 204216
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support