-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_15/scaffold_15_10643600-10818422 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_15-snap.2190-T1 Sorry, intron length (4) is less than minimum required (10) Valid prediction for HiQ_model.g24561.t1 Valid prediction for snap_scaffold_15-snap.2211-T1 Valid prediction for snap_scaffold_15-snap.2215-T1 Valid prediction for pasa_asmbl_15462.p1 Valid prediction for HiQ_model.g24560.t1 Valid prediction for CodingQuarry_transcript_18129-T1 Valid prediction for Augustus_model.g24564.t1 Couldn't classify 130590, 130625 Couldn't classify 131493, 131515 Sorry, prediction pasa_asmbl_15470.p1 fails validation. (CCA) AG 130590-130625 GT AGG (ACT) AG 130825-130866 GT AGG (TCA) AG 131076-131199 GT TGG (TGA) AG 131312-131389 GT TGG (GTA) AG 131493-131515 AA AGA -recovered pasa_asmbl_15470.p1, internal, 130590, 130625 -recovered pasa_asmbl_15470.p1, internal, 130825, 130866 -recovered pasa_asmbl_15470.p1, internal, 131076, 131199 -recovered pasa_asmbl_15470.p1, internal, 131312, 131389 Valid prediction for snap_scaffold_15-snap.2206-T1 Valid prediction for snap_scaffold_15-snap.2192-T1 Valid prediction for GlimmerHMM_glimmerT_36870-T1 Valid prediction for snap_scaffold_15-snap.2201-T1 Valid prediction for pasa_asmbl_15471.p1 Valid prediction for snap_scaffold_15-snap.2199-T1 Valid prediction for snap_scaffold_15-snap.2196-T1 Valid prediction for snap_scaffold_15-snap.2219-T1 Valid prediction for GlimmerHMM_glimmerT_36874-T1 Valid prediction for snap_scaffold_15-snap.2216-T1 Valid prediction for snap_scaffold_15-snap.2198-T1 Couldn't classify 129306, 129361 Sorry, prediction pasa_asmbl_15469.p1 fails validation. (TCT) AT 129306-129361 GT AGG (CTG) AG 129628-129708 GT TGG (TGA) AG 129791-129971 AG AAA -recovered pasa_asmbl_15469.p1, terminal, 129791, 129971 -recovered pasa_asmbl_15469.p1, internal, 129628, 129708 Valid prediction for snap_scaffold_15-snap.2214-T1 Valid prediction for snap_scaffold_15-snap.2203-T1 Valid prediction for GlimmerHMM_glimmerT_36872-T1 Valid prediction for CodingQuarry_transcript_18126-T1 Valid prediction for snap_scaffold_15-snap.2191-T1 Valid prediction for HiQ_model.g24567.t1 Valid prediction for snap_scaffold_15-snap.2207-T1 Valid prediction for snap_scaffold_15-snap.2188-T1 Valid prediction for snap_scaffold_15-snap.2195-T1 Valid prediction for snap_scaffold_15-snap.2194-T1 Valid prediction for snap_scaffold_15-snap.2208-T1 Valid prediction for snap_scaffold_15-snap.2209-T1 Valid prediction for GlimmerHMM_glimmerT_36873-T1 Valid prediction for GlimmerHMM_glimmerT_36868-T1 Valid prediction for snap_scaffold_15-snap.2200-T1 Valid prediction for snap_scaffold_15-snap.2197-T1 Valid prediction for GlimmerHMM_glimmerT_36880-T1 Valid prediction for GlimmerHMM_glimmerT_36871-T1 Valid prediction for snap_scaffold_15-snap.2210-T1 Valid prediction for HiQ_model.g24559.t1 Valid prediction for CodingQuarry_transcript_18128-T1 Valid prediction for Augustus_model.g24558.t1 Valid prediction for CodingQuarry_transcript_18127-T1 Valid prediction for snap_scaffold_15-snap.2218-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g24565.t1 Valid prediction for GlimmerHMM_glimmerT_36876-T1 Valid prediction for snap_scaffold_15-snap.2193-T1 Valid prediction for Augustus_model.g24557.t1 Valid prediction for snap_scaffold_15-snap.2212-T1 Couldn't classify 148827, 148982 Couldn't classify 152509, 152632 Sorry, prediction pasa_asmbl_14449.p1 fails validation. (GAG) TG 148827-148982 GT AGG (TCA) AG 149247-149378 GT AGG (CGG) AG 149586-149782 GT AGG (GTA) AG 150091-150223 GT TGG (GAG) AG 150335-150517 GT AGG (TTG) AG 150683-150832 GT AGG (GGT) AG 150984-151160 GT AGG (ATC) AG 151262-151417 GT AAG (GAG) AG 151542-151697 GT TGG (ATC) AG 151887-152057 GT AGG (AGC) AG 152198-152331 GT AGG (GTG) AG 152509-152632 AG AGA -recovered pasa_asmbl_14449.p1, internal, 149247, 149378 -recovered pasa_asmbl_14449.p1, internal, 149586, 149782 -recovered pasa_asmbl_14449.p1, internal, 150091, 150223 -recovered pasa_asmbl_14449.p1, internal, 150335, 150517 -recovered pasa_asmbl_14449.p1, internal, 150683, 150832 -recovered pasa_asmbl_14449.p1, internal, 150984, 151160 -recovered pasa_asmbl_14449.p1, internal, 151262, 151417 -recovered pasa_asmbl_14449.p1, internal, 151542, 151697 -recovered pasa_asmbl_14449.p1, internal, 151887, 152057 -recovered pasa_asmbl_14449.p1, internal, 152198, 152331 Couldn't classify 131603, 131647 Couldn't classify 133151, 133249 Sorry, prediction pasa_asmbl_14451.p1 fails validation. (GGC) TT 131603-131647 GT AGG (GGT) AG 132346-132528 GT AGG (GCA) AG 132856-132993 GT AGG (GCA) AG 133151-133249 CA GCC -recovered pasa_asmbl_14451.p1, internal, 132346, 132528 -recovered pasa_asmbl_14451.p1, internal, 132856, 132993 Valid prediction for GlimmerHMM_glimmerT_36867-T1 Valid prediction for snap_scaffold_15-snap.2217-T1 Valid prediction for snap_scaffold_15-snap.2202-T1 Valid prediction for GlimmerHMM_glimmerT_36877-T1 Couldn't classify 39839, 39919 Couldn't classify 40834, 40916 Couldn't classify 41050, 41139 Sorry, prediction pasa_asmbl_14452.p1 fails validation. (CTG) CC 39839-39919 GT AGG (GGT) AG 40011-40102 GT ACG (AGT) AG 40196-40253 GT AGG (GGT) AG 40414-40516 GT AGG (ATC) AG 40673-40724 GT AGG (TAT) AG 40834-40916 AT CTA (CAG) AC 41050-41139 GT TGG (ATT) AG 41228-41294 GT GGG (GAG) AG 41400-41484 CG GAC -recovered pasa_asmbl_14452.p1, terminal, 41400, 41484 -recovered pasa_asmbl_14452.p1, internal, 40011, 40102 -recovered pasa_asmbl_14452.p1, internal, 40196, 40253 -recovered pasa_asmbl_14452.p1, internal, 40414, 40516 -recovered pasa_asmbl_14452.p1, internal, 40673, 40724 -recovered pasa_asmbl_14452.p1, internal, 41228, 41294 Valid prediction for Augustus_model.g24562.t1 Valid prediction for GlimmerHMM_glimmerT_36869-T1 Couldn't classify 161359, 161567 Sorry, prediction pasa_asmbl_14440.p1 fails validation. (TCT) CC 161359-161567 GC AGG (GGT) AG 162330-162492 GT AGG (GAC) AG 162827-163014 GT AAG (GAT) AG 163205-163355 GT AGG (GCA) AG 163849-164031 GT AGG (CAC) AG 164118-164255 GT GGG (GCC) AG 164395-164586 GT CTG (CTT) AG 164866-165172 GT AGG (ATA) AG 165478-165546 GT GGG (GTG) AG 166183-166316 GT ATG (ATG) AG 166607-166727 GT TGG (GTG) AG 166941-167149 GT AGG (GAG) AG 167565-167771 GT AGG (GAG) AG 167877-168005 GT CGG (CAA) AG 168179-168457 GT AGG (GAG) AG 168671-168763 GT CGG (CCC) AG 169561-169619 GT AGG (GGT) AG 171458-171731 GG AAG -recovered pasa_asmbl_14440.p1, initial, 166607, 166727 -recovered pasa_asmbl_14440.p1, terminal, 171458, 171731 -recovered pasa_asmbl_14440.p1, internal, 162330, 162492 -recovered pasa_asmbl_14440.p1, internal, 162827, 163014 -recovered pasa_asmbl_14440.p1, internal, 163205, 163355 -recovered pasa_asmbl_14440.p1, internal, 163849, 164031 -recovered pasa_asmbl_14440.p1, internal, 164118, 164255 -recovered pasa_asmbl_14440.p1, internal, 164395, 164586 -recovered pasa_asmbl_14440.p1, internal, 164866, 165172 -recovered pasa_asmbl_14440.p1, internal, 165478, 165546 -recovered pasa_asmbl_14440.p1, internal, 166183, 166316 -recovered pasa_asmbl_14440.p1, internal, 166607, 166727 -recovered pasa_asmbl_14440.p1, internal, 166941, 167149 -recovered pasa_asmbl_14440.p1, internal, 167565, 167771 -recovered pasa_asmbl_14440.p1, internal, 167877, 168005 -recovered pasa_asmbl_14440.p1, internal, 168179, 168457 -recovered pasa_asmbl_14440.p1, internal, 168671, 168763 -recovered pasa_asmbl_14440.p1, internal, 169561, 169619 Valid prediction for snap_scaffold_15-snap.2189-T1 Valid prediction for Augustus_model.g24566.t1 Couldn't classify 143121, 143204 Sorry, prediction Augustus_model.g24555.t1 fails validation. (ATG) CG 74741-74780 GT AGG (GTA) AG 75278-75313 GT AGG (TAA) AG 76737-76813 GT AGG (CGT) AG 77297-77392 GT TGG (CCA) AG 78258-78341 GT AGG (TCT) AG 80292-80312 GT CTG (ATA) AG 80565-80657 GT AGG (ATT) AG 80874-81055 GT AAG (GCA) AG 81278-81474 GT AGG (ACG) AG 82059-82171 GT AGG (AGA) AG 84213-84320 GT AGG (TTG) AG 84994-85131 GT GGG (TTC) AG 85261-85425 GT AGG (GAT) AG 85539-85651 GT AGG (AAT) AG 85843-86011 GT TGG (TCT) AG 86339-86435 GT AGG (TGG) AG 87560-87765 GT GGG (GAT) AG 88308-88472 GT AGG (TAC) AG 88732-88884 GT AGG (AAC) AG 89189-89332 GT AGG (GTG) AG 89639-89803 GT AGG (GAC) AG 90008-90166 GT AGG (GCT) AG 90420-90584 GT TGG (GAG) AG 90794-90928 GT AGG (GAC) AG 91252-91410 GT GGG (ATG) AG 91504-91712 GT AGG (GTT) AG 91815-91923 GT GGG (GAG) AG 92150-92242 GT TGG (GTT) AG 92446-92610 GT AGG (CAA) AG 92899-93063 GT AGG (GCC) AG 93419-93559 GT AAG (GAC) AG 93675-93835 GT AAG (TAT) AG 94001-94178 GT AGG (ATG) AG 94496-94723 GT AGG (ATG) AG 94868-94966 GT TGG (GAT) AG 95087-95274 GT AGG (ATT) AG 95382-95505 GT AGG (GAA) AG 95723-95889 GT AGG (GCT) AG 96168-96321 GT AGG (GAG) AG 96412-97067 GT AGG (ACT) AG 97233-97412 GT GGG (CCA) AG 97497-97650 GT GGG (CAT) AG 98540-98698 GT AGG (ATA) AG 99785-99967 GT AGG (GTG) AG 100123-100224 GT AGG (GTT) AG 100377-100580 GT AGG (GAG) AG 100748-100955 GT CGG (AGC) AG 101727-101839 GT AGG (GAG) AG 102087-102295 GT GGG (GTT) AG 102559-102720 GT AGG (GAG) AG 102922-103201 GT AGG (GAC) AG 103513-103688 GT AGG (TCG) AG 104725-105034 GT AGG (GAG) AG 105136-105300 GT GGG (GAG) AG 106118-106477 GT AGG (GAG) AG 108065-108201 GT AGG (CCT) AG 109805-109982 GT AGG (GAG) AG 111456-111638 GT AGG (AAC) AG 111806-111949 GT AGG (ATG) AG 112997-113137 GT AGG (GAC) AG 114140-114304 GT AGG (GGT) AG 114476-114648 GT AGG (CCA) AG 114799-114952 GT AGG (TTG) AG 115072-115215 GT AGG (GCT) AG 115612-115776 GT AGG (CTC) AG 116177-116494 GT AGG (CGG) AG 116640-116789 GT AGG (GAG) AG 118223-118393 GT AGG (GCT) AG 121204-121530 GT AGG (GCC) AG 121732-121884 GT AGG (GCC) AG 122062-122229 GT AGG (GCC) AG 122590-122766 GT GAG (GTG) AG 123840-123986 GT AGG (GTG) AG 124111-124236 GT AGG (ATC) AG 124509-124685 GT AGG (GAG) AG 125188-125453 GT AGG (AGC) AG 125582-125738 GT AGG (GTG) AG 125832-126121 GT AGG (GCT) AG 126299-126407 GT AGG (GCC) AG 126583-128199 GT AGG (ATG) AG 128744-128950 GT CTG (GAG) AG 129248-129364 GT AGG (TCT) AG 129462-129680 GT AGG (ATG) AG 130455-130747 GT AGG (CCT) AG 130849-131014 GT AGG (ACA) AG 131204-131359 GT AGG (GTC) AG 131495-131647 GT AGG (GGT) AG 132346-132528 GT AGG (GCA) AG 132856-132993 GT AGG (GCA) AG 133151-133336 GT AGG (GAC) AG 133749-133871 GT AGG (CGT) AG 133970-134152 GT AGG (GAG) AG 134346-134489 GT AGG (GGG) AG 137254-137463 GT TGG (ATG) AG 139377-139517 GT AGG (GGT) AG 140942-141058 GT TGG (ATC) AG 141233-141394 GT AGG (GCC) AG 141931-142143 GT AGG (GAG) AG 142500-142673 GT AGG (CTT) AG 143121-143204 GT TGG -recovered Augustus_model.g24555.t1, initial, 74741, 74780 -recovered Augustus_model.g24555.t1, initial, 91504, 91712 -recovered Augustus_model.g24555.t1, initial, 94496, 94723 -recovered Augustus_model.g24555.t1, initial, 94868, 94966 -recovered Augustus_model.g24555.t1, initial, 112997, 113137 -recovered Augustus_model.g24555.t1, initial, 128744, 128950 -recovered Augustus_model.g24555.t1, initial, 130455, 130747 -recovered Augustus_model.g24555.t1, initial, 139377, 139517 add_exon() Sorry, Augustus_model.g24555.t1 80874-81055-terminal-2 is invalid. -recovered Augustus_model.g24555.t1, terminal, 80874, 81055 -recovered Augustus_model.g24555.t1, internal, 75278, 75313 -recovered Augustus_model.g24555.t1, internal, 76737, 76813 -recovered Augustus_model.g24555.t1, internal, 77297, 77392 -recovered Augustus_model.g24555.t1, internal, 78258, 78341 -recovered Augustus_model.g24555.t1, internal, 80292, 80312 -recovered Augustus_model.g24555.t1, internal, 80565, 80657 -recovered Augustus_model.g24555.t1, internal, 80874, 81055 -recovered Augustus_model.g24555.t1, internal, 81278, 81474 -recovered Augustus_model.g24555.t1, internal, 82059, 82171 -recovered Augustus_model.g24555.t1, internal, 84213, 84320 -recovered Augustus_model.g24555.t1, internal, 84994, 85131 -recovered Augustus_model.g24555.t1, internal, 85261, 85425 -recovered Augustus_model.g24555.t1, internal, 85539, 85651 -recovered Augustus_model.g24555.t1, internal, 85843, 86011 -recovered Augustus_model.g24555.t1, internal, 86339, 86435 -recovered Augustus_model.g24555.t1, internal, 87560, 87765 -recovered Augustus_model.g24555.t1, internal, 88308, 88472 -recovered Augustus_model.g24555.t1, internal, 88732, 88884 -recovered Augustus_model.g24555.t1, internal, 89189, 89332 -recovered Augustus_model.g24555.t1, internal, 89639, 89803 -recovered Augustus_model.g24555.t1, internal, 90008, 90166 -recovered Augustus_model.g24555.t1, internal, 90420, 90584 -recovered Augustus_model.g24555.t1, internal, 90794, 90928 -recovered Augustus_model.g24555.t1, internal, 91252, 91410 -recovered Augustus_model.g24555.t1, internal, 91504, 91712 -recovered Augustus_model.g24555.t1, internal, 91815, 91923 -recovered Augustus_model.g24555.t1, internal, 92150, 92242 -recovered Augustus_model.g24555.t1, internal, 92446, 92610 -recovered Augustus_model.g24555.t1, internal, 92899, 93063 -recovered Augustus_model.g24555.t1, internal, 93419, 93559 -recovered Augustus_model.g24555.t1, internal, 93675, 93835 -recovered Augustus_model.g24555.t1, internal, 94001, 94178 -recovered Augustus_model.g24555.t1, internal, 94496, 94723 -recovered Augustus_model.g24555.t1, internal, 94868, 94966 -recovered Augustus_model.g24555.t1, internal, 95087, 95274 -recovered Augustus_model.g24555.t1, internal, 95382, 95505 -recovered Augustus_model.g24555.t1, internal, 95723, 95889 -recovered Augustus_model.g24555.t1, internal, 96168, 96321 -recovered Augustus_model.g24555.t1, internal, 96412, 97067 -recovered Augustus_model.g24555.t1, internal, 97233, 97412 -recovered Augustus_model.g24555.t1, internal, 97497, 97650 -recovered Augustus_model.g24555.t1, internal, 98540, 98698 -recovered Augustus_model.g24555.t1, internal, 99785, 99967 -recovered Augustus_model.g24555.t1, internal, 100123, 100224 -recovered Augustus_model.g24555.t1, internal, 100377, 100580 -recovered Augustus_model.g24555.t1, internal, 100748, 100955 -recovered Augustus_model.g24555.t1, internal, 101727, 101839 -recovered Augustus_model.g24555.t1, internal, 102087, 102295 -recovered Augustus_model.g24555.t1, internal, 102559, 102720 -recovered Augustus_model.g24555.t1, internal, 102922, 103201 -recovered Augustus_model.g24555.t1, internal, 103513, 103688 -recovered Augustus_model.g24555.t1, internal, 104725, 105034 -recovered Augustus_model.g24555.t1, internal, 105136, 105300 -recovered Augustus_model.g24555.t1, internal, 106118, 106477 -recovered Augustus_model.g24555.t1, internal, 108065, 108201 -recovered Augustus_model.g24555.t1, internal, 109805, 109982 -recovered Augustus_model.g24555.t1, internal, 111456, 111638 -recovered Augustus_model.g24555.t1, internal, 111806, 111949 -recovered Augustus_model.g24555.t1, internal, 112997, 113137 -recovered Augustus_model.g24555.t1, internal, 114140, 114304 -recovered Augustus_model.g24555.t1, internal, 114476, 114648 -recovered Augustus_model.g24555.t1, internal, 114799, 114952 -recovered Augustus_model.g24555.t1, internal, 115072, 115215 -recovered Augustus_model.g24555.t1, internal, 115612, 115776 -recovered Augustus_model.g24555.t1, internal, 116177, 116494 -recovered Augustus_model.g24555.t1, internal, 116640, 116789 -recovered Augustus_model.g24555.t1, internal, 118223, 118393 -recovered Augustus_model.g24555.t1, internal, 121204, 121530 -recovered Augustus_model.g24555.t1, internal, 121732, 121884 -recovered Augustus_model.g24555.t1, internal, 122062, 122229 -recovered Augustus_model.g24555.t1, internal, 122590, 122766 -recovered Augustus_model.g24555.t1, internal, 123840, 123986 -recovered Augustus_model.g24555.t1, internal, 124111, 124236 -recovered Augustus_model.g24555.t1, internal, 124509, 124685 -recovered Augustus_model.g24555.t1, internal, 125188, 125453 -recovered Augustus_model.g24555.t1, internal, 125582, 125738 -recovered Augustus_model.g24555.t1, internal, 125832, 126121 -recovered Augustus_model.g24555.t1, internal, 126299, 126407 -recovered Augustus_model.g24555.t1, internal, 126583, 128199 -recovered Augustus_model.g24555.t1, internal, 128744, 128950 -recovered Augustus_model.g24555.t1, internal, 129248, 129364 -recovered Augustus_model.g24555.t1, internal, 129462, 129680 -recovered Augustus_model.g24555.t1, internal, 130455, 130747 -recovered Augustus_model.g24555.t1, internal, 130849, 131014 -recovered Augustus_model.g24555.t1, internal, 131204, 131359 -recovered Augustus_model.g24555.t1, internal, 131495, 131647 -recovered Augustus_model.g24555.t1, internal, 132346, 132528 -recovered Augustus_model.g24555.t1, internal, 132856, 132993 -recovered Augustus_model.g24555.t1, internal, 133151, 133336 -recovered Augustus_model.g24555.t1, internal, 133749, 133871 -recovered Augustus_model.g24555.t1, internal, 133970, 134152 -recovered Augustus_model.g24555.t1, internal, 134346, 134489 -recovered Augustus_model.g24555.t1, internal, 137254, 137463 -recovered Augustus_model.g24555.t1, internal, 139377, 139517 -recovered Augustus_model.g24555.t1, internal, 140942, 141058 -recovered Augustus_model.g24555.t1, internal, 141233, 141394 -recovered Augustus_model.g24555.t1, internal, 141931, 142143 -recovered Augustus_model.g24555.t1, internal, 142500, 142673 -recovered Augustus_model.g24555.t1, internal, 143121, 143204 Valid prediction for snap_scaffold_15-snap.2204-T1 Valid prediction for GlimmerHMM_glimmerT_36875-T1 Valid prediction for Augustus_model.g24556.t1 Valid prediction for CodingQuarry_transcript_18125-T1 Valid prediction for GlimmerHMM_glimmerT_36878-T1 Valid prediction for snap_scaffold_15-snap.2213-T1 Sorry, intron length (7) is less than minimum required (10) Valid prediction for GlimmerHMM_glimmerT_36865-T1 Valid prediction for snap_scaffold_15-snap.2205-T1 Valid prediction for GlimmerHMM_glimmerT_36864-T1 Couldn't classify 145635, 145748 Couldn't classify 148490, 148516 Sorry, prediction pasa_asmbl_14450.p1 fails validation. (GAG) AG 145635-145748 GT GGG (GAG) AG 145941-146038 GT AGG (CGA) AG 146182-146329 GT CGG (GGG) AG 146560-146688 GT AGG (ACA) AG 147046-147225 GT AGG (GGT) AG 147631-147846 GT AGG (GCG) AG 147963-148064 GT AGG (ACT) AG 148147-148266 GT AGG (GAT) AG 148490-148516 GT TGG -recovered pasa_asmbl_14450.p1, internal, 145635, 145748 -recovered pasa_asmbl_14450.p1, internal, 145941, 146038 -recovered pasa_asmbl_14450.p1, internal, 146182, 146329 -recovered pasa_asmbl_14450.p1, internal, 146560, 146688 -recovered pasa_asmbl_14450.p1, internal, 147046, 147225 -recovered pasa_asmbl_14450.p1, internal, 147631, 147846 -recovered pasa_asmbl_14450.p1, internal, 147963, 148064 -recovered pasa_asmbl_14450.p1, internal, 148147, 148266 -recovered pasa_asmbl_14450.p1, internal, 148490, 148516 Couldn't classify 37284, 37362 Couldn't classify 38855, 38953 Sorry, prediction pasa_asmbl_14453.p1 fails validation. (CTC) CC 37284-37362 GT AGG (GCC) AG 37803-37870 GT AGG (ACC) AG 38168-38258 GT CGG (TGG) AG 38554-38675 GT CGG (AAG) AG 38855-38953 GT ACG -recovered pasa_asmbl_14453.p1, internal, 37803, 37870 -recovered pasa_asmbl_14453.p1, internal, 38168, 38258 -recovered pasa_asmbl_14453.p1, internal, 38554, 38675 -recovered pasa_asmbl_14453.p1, internal, 38855, 38953 Valid prediction for snap_scaffold_15-snap.2187-T1 Valid prediction for GlimmerHMM_glimmerT_36879-T1 Valid prediction for Augustus_model.g24563.t1 Couldn't classify 154052, 154206 Couldn't classify 154951, 155140 Sorry, prediction pasa_asmbl_14448.p1 fails validation. (GTG) AG 154052-154206 GT AGG (TAA) AG 154498-154645 GT AGG (CTG) AG 154738-154832 GT AGG (AGA) AG 154951-155140 CC AGC -recovered pasa_asmbl_14448.p1, internal, 154052, 154206 -recovered pasa_asmbl_14448.p1, internal, 154498, 154645 -recovered pasa_asmbl_14448.p1, internal, 154738, 154832 Valid prediction for GlimmerHMM_glimmerT_36866-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 12570, rend_intergenic: 9187 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 46080, rend_intergenic: 13233 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 79944, rend_intergenic: 47836 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 83590, rend_intergenic: 80068 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 95444, rend_intergenic: 86136 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 112607, rend_intergenic: 101177 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 160388, rend_intergenic: 147561 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 174823 -exon list size: 554 building trellis 0.2 0.4 0.5 0.7 0.9 1.1 1.3 1.4 1.6 1.8 2.0 2.2 2.3 2.5 2.7 2.9 3.1 3.2 3.4 3.6 3.8 4.0 4.1 4.3 4.5 4.7 4.9 5.0 5.2 5.4 5.6 5.8 5.9 6.1 6.3 6.5 6.7 6.8 7.0 7.2 7.4 7.6 7.7 7.9 8.1 8.3 8.5 8.6 8.8 9.0 9.2 9.4 9.5 9.7 9.9 10.1 10.3 10.4 10.6 10.8 11.0 11.2 11.3 11.5 11.7 11.9 12.1 12.2 12.4 12.6 12.8 12.9 13.1 13.3 13.5 13.7 13.8 14.0 14.2 14.4 14.6 14.7 14.9 15.1 15.3 15.5 15.6 15.8 16.0 16.2 16.4 16.5 16.7 16.9 17.1 17.3 17.4 17.6 17.8 18.0 18.2 18.3 18.5 18.7 18.9 19.1 19.2 19.4 19.6 19.8 20.0 20.1 20.3 20.5 20.7 20.9 21.0 21.2 21.4 21.6 21.8 21.9 22.1 22.3 22.5 22.7 22.8 23.0 23.2 23.4 23.6 23.7 23.9 24.1 24.3 24.5 24.6 24.8 25.0 25.2 25.4 25.5 25.7 25.9 26.1 26.3 26.4 26.6 26.8 27.0 27.2 27.3 27.5 27.7 27.9 28.1 28.2 28.4 28.6 28.8 29.0 29.1 29.3 29.5 29.7 29.9 30.0 30.2 30.4 30.6 30.8 30.9 31.1 31.3 31.5 31.7 31.8 32.0 32.2 32.4 32.6 32.7 32.9 33.1 33.3 33.5 33.6 33.8 34.0 34.2 34.4 34.5 34.7 34.9 35.1 35.3 35.4 35.6 35.8 36.0 36.2 36.3 36.5 36.7 36.9 37.1 37.2 37.4 37.6 37.8 37.9 38.1 38.3 38.5 38.7 38.8 39.0 39.2 39.4 39.6 39.7 39.9 40.1 40.3 40.5 40.6 40.8 41.0 41.2 41.4 41.5 41.7 41.9 42.1 42.3 42.4 42.6 42.8 43.0 43.2 43.3 43.5 43.7 43.9 44.1 44.2 44.4 44.6 44.8 45.0 45.1 45.3 45.5 45.7 45.9 46.0 46.2 46.4 46.6 46.8 46.9 47.1 47.3 47.5 47.7 47.8 48.0 48.2 48.4 48.6 48.7 48.9 49.1 49.3 49.5 49.6 49.8 50.0 50.2 50.4 50.5 50.7 50.9 51.1 51.3 51.4 51.6 51.8 52.0 52.2 52.3 52.5 52.7 52.9 53.1 53.2 53.4 53.6 53.8 54.0 54.1 54.3 54.5 54.7 54.9 55.0 55.2 55.4 55.6 55.8 55.9 56.1 56.3 56.5 56.7 56.8 57.0 57.2 57.4 57.6 57.7 57.9 58.1 58.3 58.5 58.6 58.8 59.0 59.2 59.4 59.5 59.7 59.9 60.1 60.3 60.4 60.6 60.8 61.0 61.2 61.3 61.5 61.7 61.9 62.1 62.2 62.4 62.6 62.8 62.9 63.1 63.3 63.5 63.7 63.8 64.0 64.2 64.4 64.6 64.7 64.9 65.1 65.3 65.5 65.6 65.8 66.0 66.2 66.4 66.5 66.7 66.9 67.1 67.3 67.4 67.6 67.8 68.0 68.2 68.3 68.5 68.7 68.9 69.1 69.2 69.4 69.6 69.8 70.0 70.1 70.3 70.5 70.7 70.9 71.0 71.2 71.4 71.6 71.8 71.9 72.1 72.3 72.5 72.7 72.8 73.0 73.2 73.4 73.6 73.7 73.9 74.1 74.3 74.5 74.6 74.8 75.0 75.2 75.4 75.5 75.7 75.9 76.1 76.3 76.4 76.6 76.8 77.0 77.2 77.3 77.5 77.7 77.9 78.1 78.2 78.4 78.6 78.8 79.0 79.1 79.3 79.5 79.7 79.9 80.0 80.2 80.4 80.6 80.8 80.9 81.1 81.3 81.5 81.7 81.8 82.0 82.2 82.4 82.6 82.7 82.9 83.1 83.3 83.5 83.6 83.8 84.0 84.2 84.4 84.5 84.7 84.9 85.1 85.3 85.4 85.6 85.8 86.0 86.2 86.3 86.5 86.7 86.9 87.1 87.2 87.4 87.6 87.8 87.9 88.1 88.3 88.5 88.7 88.8 89.0 89.2 89.4 89.6 89.7 89.9 90.1 90.3 90.5 90.6 90.8 91.0 91.2 91.4 91.5 91.7 91.9 92.1 92.3 92.4 92.6 92.8 93.0 93.2 93.3 93.5 93.7 93.9 94.1 94.2 94.4 94.6 94.8 95.0 95.1 95.3 95.5 95.7 95.9 96.0 96.2 96.4 96.6 96.8 96.9 97.1 97.3 97.5 97.7 97.8 98.0 98.2 98.4 98.6 98.7 98.9 99.1 99.3 99.5 99.6 99.8 -found 17 predictions from path traversal Error with prediction: snap lend_intergenic: 12570, rend_intergenic: 9187 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 46080, rend_intergenic: 13233 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 79944, rend_intergenic: 47836 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 83590, rend_intergenic: 80068 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 95444, rend_intergenic: 86136 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 112607, rend_intergenic: 101177 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 160388, rend_intergenic: 147561 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 13 predictions persist after filtering for low support