-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1490

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 441, 510
Couldn't classify 2218, 2290
Sorry, prediction snap_scaffold_1490-snap.1-T1 fails validation.
(GTG)	 AG	441-510	GT	AGG
(GAA)	 AG	623-770	GT	AGG
(GAA)	 AG	970-1155	GT	AGG
(GTG)	 AG	1368-1506	GT	TGG
(CGT)	 AG	1637-1722	GT	AGG
(GTG)	 AG	1847-1992	GT	GGG
(ACA)	 AG	2218-2290	GT	AGG
-recovered snap_scaffold_1490-snap.1-T1, internal, 441, 510
-recovered snap_scaffold_1490-snap.1-T1, internal, 623, 770
-recovered snap_scaffold_1490-snap.1-T1, internal, 970, 1155
-recovered snap_scaffold_1490-snap.1-T1, internal, 1368, 1506
-recovered snap_scaffold_1490-snap.1-T1, internal, 1637, 1722
-recovered snap_scaffold_1490-snap.1-T1, internal, 1847, 1992
-recovered snap_scaffold_1490-snap.1-T1, internal, 2218, 2290
Couldn't classify 441, 510
Sorry, prediction GlimmerHMM_glimmerT_61176-T1 fails validation.
(GTG)	 AG	441-510	GT	AGG
(GAA)	 AG	623-770	GT	AGG
(GAA)	 AG	970-1155	GT	AGG
(GTG)	 AG	1368-1506	GT	TGG
(CGT)	 AG	1637-1722	GT	AGG
(GTG)	 AG	1847-1996	GG	AGG
-recovered GlimmerHMM_glimmerT_61176-T1, terminal, 1847, 1996
-recovered GlimmerHMM_glimmerT_61176-T1, internal, 441, 510
-recovered GlimmerHMM_glimmerT_61176-T1, internal, 623, 770
-recovered GlimmerHMM_glimmerT_61176-T1, internal, 970, 1155
-recovered GlimmerHMM_glimmerT_61176-T1, internal, 1368, 1506
-recovered GlimmerHMM_glimmerT_61176-T1, internal, 1637, 1722
Couldn't classify 3, 36
Couldn't classify 2218, 2290
Sorry, prediction pasa_asmbl_13902.p1 fails validation.
(GAT)	 CG	3-36	GT	AGG
(GTG)	 AG	441-510	GT	AGG
(GAA)	 AG	623-770	GT	AGG
(GAA)	 AG	970-1155	GT	AGG
(GTG)	 AG	1368-1506	GT	TGG
(CGT)	 AG	1637-1722	GT	AGG
(GTG)	 AG	1847-1992	GT	GGG
(ACA)	 AG	2218-2290	GT	AGG
-recovered pasa_asmbl_13902.p1, internal, 441, 510
-recovered pasa_asmbl_13902.p1, internal, 623, 770
-recovered pasa_asmbl_13902.p1, internal, 970, 1155
-recovered pasa_asmbl_13902.p1, internal, 1368, 1506
-recovered pasa_asmbl_13902.p1, internal, 1637, 1722
-recovered pasa_asmbl_13902.p1, internal, 1847, 1992
-recovered pasa_asmbl_13902.p1, internal, 2218, 2290
Couldn't classify 441, 510
Couldn't classify 2218, 2290
Sorry, prediction Augustus_model.g40519.t1 fails validation.
(GTG)	 AG	441-510	GT	AGG
(GAA)	 AG	623-770	GT	AGG
(GAA)	 AG	970-1155	GT	AGG
(GTG)	 AG	1368-1506	GT	TGG
(CGT)	 AG	1637-1722	GT	AGG
(GTG)	 AG	1847-1992	GT	GGG
(ACA)	 AG	2218-2290	GT	AGG
-recovered Augustus_model.g40519.t1, internal, 441, 510
-recovered Augustus_model.g40519.t1, internal, 623, 770
-recovered Augustus_model.g40519.t1, internal, 970, 1155
-recovered Augustus_model.g40519.t1, internal, 1368, 1506
-recovered Augustus_model.g40519.t1, internal, 1637, 1722
-recovered Augustus_model.g40519.t1, internal, 1847, 1992
-recovered Augustus_model.g40519.t1, internal, 2218, 2290

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2344
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support