-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_149

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 35, 278
Sorry, prediction snap_scaffold_149-snap.1-T1 fails validation.
(GTC)	 AG	35-278	GT	GTG
(ACG)	 AG	329-823	GT	CGG
(ATG)	 AG	920-1171	GT	TTG
(ACC)	 AG	1480-1737	AA	AAA
-recovered snap_scaffold_149-snap.1-T1, initial, 920, 1171
-recovered snap_scaffold_149-snap.1-T1, terminal, 1480, 1737
-recovered snap_scaffold_149-snap.1-T1, internal, 35, 278
-recovered snap_scaffold_149-snap.1-T1, internal, 329, 823
-recovered snap_scaffold_149-snap.1-T1, internal, 920, 1171
Couldn't classify 329, 772
Sorry, prediction GlimmerHMM_glimmerT_59900-T1 fails validation.
(ACG)	 AG	329-772	GT	GAG
(ATG)	 AG	920-1171	GT	TTG
(ACC)	 AG	1480-1737	AA	AAA
-recovered GlimmerHMM_glimmerT_59900-T1, initial, 920, 1171
-recovered GlimmerHMM_glimmerT_59900-T1, terminal, 1480, 1737
-recovered GlimmerHMM_glimmerT_59900-T1, internal, 329, 772
-recovered GlimmerHMM_glimmerT_59900-T1, internal, 920, 1171
Couldn't classify 5, 913
Sorry, prediction pasa_asmbl_13901.p1 fails validation.
(GTT)	 TG	5-913	CC	AGC
Couldn't classify 109, 721
Sorry, prediction Augustus_model.g39677.t1 fails validation.
(GCA)	 AG	109-721	GT	AGG
(ATG)	 AG	920-1195	TA	AGT
-recovered Augustus_model.g39677.t1, terminal, 920, 1195
-recovered Augustus_model.g39677.t1, internal, 109, 721
Valid prediction for GlimmerHMM_glimmerT_59899-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 12520
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 10783
-exon list size: 2


building trellis

25.0    
50.0    
75.0    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support