-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1487

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 753, 805
Couldn't classify 1985, 2172
Sorry, prediction snap_scaffold_1487-snap.1-T1 fails validation.
(AGC)	 AG	753-805	GT	TGG
(GTG)	 AG	1985-2172	GT	AGG
-recovered snap_scaffold_1487-snap.1-T1, internal, 753, 805
-recovered snap_scaffold_1487-snap.1-T1, internal, 1985, 2172
Couldn't classify 289, 362
Sorry, prediction Augustus_model.g40516.t1 fails validation.
(ATC)	 AG	289-362	GT	GGG
(AGC)	 AG	753-815	CA	AAC
-recovered Augustus_model.g40516.t1, terminal, 753, 815
-recovered Augustus_model.g40516.t1, internal, 289, 362

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g40517.t1
add_exon() Sorry, Augustus_model.g40517.t1 170-333-terminal-1 is invalid.
Valid prediction for GlimmerHMM_glimmerT_61174-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61174-T1 170-333-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2352
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support