-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_148

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 55, 206
Sorry, prediction snap_scaffold_148-snap.6-T1 fails validation.
(GTA)	 AG	55-206	GT	CGG
(GTC)	 AG	418-514	GT	GGG
(GTA)	 AG	755-910	GT	AGG
(GAG)	 AG	1167-1333	GT	AGG
(GGA)	 AG	1720-1818	GG	GAG
-recovered snap_scaffold_148-snap.6-T1, terminal, 1720, 1818
-recovered snap_scaffold_148-snap.6-T1, internal, 55, 206
-recovered snap_scaffold_148-snap.6-T1, internal, 418, 514
-recovered snap_scaffold_148-snap.6-T1, internal, 755, 910
-recovered snap_scaffold_148-snap.6-T1, internal, 1167, 1333
Couldn't classify 80, 206
Sorry, prediction Augustus_model.g39676.t1 fails validation.
(CGA)	 AG	80-206	GT	CGG
(GTC)	 AG	418-514	GT	GGG
(GTA)	 AG	755-910	GT	AGG
(GAG)	 AG	1167-1333	GT	AGG
(GGA)	 AG	1720-1818	GG	GAG
-recovered Augustus_model.g39676.t1, terminal, 1720, 1818
-recovered Augustus_model.g39676.t1, internal, 80, 206
-recovered Augustus_model.g39676.t1, internal, 418, 514
-recovered Augustus_model.g39676.t1, internal, 755, 910
-recovered Augustus_model.g39676.t1, internal, 1167, 1333
Valid prediction for HiQ_model.g39674.t1
Couldn't classify 9444, 9489
Sorry, prediction pasa_asmbl_13895.p1 fails validation.
(ATG)	 AG	6251-6315	GT	AGG
(GAA)	 AG	6517-6610	GT	AGG
(GAT)	 AG	6761-6858	GT	TAG
(CTG)	 AG	7214-7354	GT	AGG
(GTA)	 AG	7709-7824	GT	GGG
(GTT)	 AG	8614-8672	GT	AGG
(CTG)	 AG	9011-9162	GT	AAG
(AGA)	 AG	9444-9489	GA	CGG
-recovered pasa_asmbl_13895.p1, initial, 6251, 6315
-recovered pasa_asmbl_13895.p1, internal, 6251, 6315
-recovered pasa_asmbl_13895.p1, internal, 6517, 6610
-recovered pasa_asmbl_13895.p1, internal, 6761, 6858
-recovered pasa_asmbl_13895.p1, internal, 7214, 7354
-recovered pasa_asmbl_13895.p1, internal, 7709, 7824
-recovered pasa_asmbl_13895.p1, internal, 8614, 8672
-recovered pasa_asmbl_13895.p1, internal, 9011, 9162
Couldn't classify 93, 206
Sorry, prediction GlimmerHMM_glimmerT_59898-T1 fails validation.
(GAG)	 AG	93-206	GT	CGG
(GTC)	 AG	418-514	GT	GGG
(GTA)	 AG	755-910	GT	AGG
(GAG)	 AG	1167-1333	GT	AGG
(GGA)	 AG	1720-1818	GG	GAG
-recovered GlimmerHMM_glimmerT_59898-T1, terminal, 1720, 1818
-recovered GlimmerHMM_glimmerT_59898-T1, internal, 93, 206
-recovered GlimmerHMM_glimmerT_59898-T1, internal, 418, 514
-recovered GlimmerHMM_glimmerT_59898-T1, internal, 755, 910
-recovered GlimmerHMM_glimmerT_59898-T1, internal, 1167, 1333
Valid prediction for GlimmerHMM_glimmerT_59896-T1
Couldn't classify 12314, 12588
Sorry, prediction Augustus_model.g39673.t1 fails validation.
(ATG)	 GA	10985-11201	GT	AGG
(ATT)	 AG	11481-12115	GT	GGG
(TCG)	 AG	12314-12588		GT
-recovered Augustus_model.g39673.t1, initial, 10985, 11201
-recovered Augustus_model.g39673.t1, internal, 11481, 12115
Valid prediction for GlimmerHMM_glimmerT_59895-T1
Valid prediction for Augustus_model.g39675.t1
Valid prediction for GlimmerHMM_glimmerT_59897-T1
Valid prediction for snap_scaffold_148-snap.5-T1
Couldn't classify 12410, 12574
Sorry, prediction snap_scaffold_148-snap.1-T1 fails validation.
(ATG)	 GA	10985-11201	GT	AGG
(ATT)	 AG	11481-12070	GT	GGG
(TCT)	 AG	12100-12393	GT	GGG
(TTT)	 AG	12410-12574	GT	CGG
-recovered snap_scaffold_148-snap.1-T1, initial, 10985, 11201
-recovered snap_scaffold_148-snap.1-T1, internal, 11481, 12070
-recovered snap_scaffold_148-snap.1-T1, internal, 12100, 12393
-recovered snap_scaffold_148-snap.1-T1, internal, 12410, 12574
Couldn't classify 54, 206
Sorry, prediction pasa_asmbl_13896.p1 fails validation.
(GGT)	 CA	54-206	GT	CGG
(GTC)	 AG	418-514	GT	GGG
(GTA)	 AG	755-910	GT	AGG
(GAG)	 AG	1167-1333	GT	AGG
(GGA)	 AG	1720-1818	GG	GAG
-recovered pasa_asmbl_13896.p1, terminal, 1720, 1818
-recovered pasa_asmbl_13896.p1, internal, 418, 514
-recovered pasa_asmbl_13896.p1, internal, 755, 910
-recovered pasa_asmbl_13896.p1, internal, 1167, 1333
Valid prediction for GlimmerHMM_glimmerT_59894-T1
Valid prediction for snap_scaffold_148-snap.2-T1
Valid prediction for snap_scaffold_148-snap.3-T1
Valid prediction for snap_scaffold_148-snap.4-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 12588
-exon list size: 54


building trellis

1.8    
3.6    
5.4    
7.1    
8.9    
10.7    
12.5    
14.3    
16.1    
17.9    
19.6    
21.4    
23.2    
25.0    
26.8    
28.6    
30.4    
32.1    
33.9    
35.7    
37.5    
39.3    
41.1    
42.9    
44.6    
46.4    
48.2    
50.0    
51.8    
53.6    
55.4    
57.1    
58.9    
60.7    
62.5    
64.3    
66.1    
67.9    
69.6    
71.4    
73.2    
75.0    
76.8    
78.6    
80.4    
82.1    
83.9    
85.7    
87.5    
89.3    
91.1    
92.9    
94.6    
96.4    
98.2    
-found 6 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 5 predictions persist after filtering for low support