-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1475

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1463, 1749
Couldn't classify 2035, 2314
Sorry, prediction snap_scaffold_1475-snap.1-T1 fails validation.
(AAG)	 AG	1463-1749	GT	CGG
(GAA)	 AG	2035-2314	GT	AGG
-recovered snap_scaffold_1475-snap.1-T1, internal, 1463, 1749
-recovered snap_scaffold_1475-snap.1-T1, internal, 2035, 2314
Valid prediction for GlimmerHMM_glimmerT_61167-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2363
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support