-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1474

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_61166-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61166-T1 1083-1339-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 706, 807
Sorry, prediction snap_scaffold_1474-snap.1-T1 fails validation.
(AGG)	 AG	706-807	GT	TTG
(GCG)	 AG	1030-1268	GT	AGG
(CCC)	 AG	1768-1813	GC	AGG
-recovered snap_scaffold_1474-snap.1-T1, terminal, 1768, 1813
-recovered snap_scaffold_1474-snap.1-T1, internal, 706, 807
-recovered snap_scaffold_1474-snap.1-T1, internal, 1030, 1268
-recovered snap_scaffold_1474-snap.1-T1, internal, 1768, 1813

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2364
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support