-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_147

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 643, 733
Couldn't classify 11862, 12050
Sorry, prediction snap_scaffold_147-snap.1-T1 fails validation.
(CTC)	 AG	643-733	GT	GGG
(AAA)	 AG	1254-1397	GT	GGG
(GTG)	 AG	1418-1672	GT	CTG
(GTG)	 AG	1970-2087	GT	TGG
(GGT)	 AG	2936-3030	GT	ATG
(GGG)	 AG	4112-4157	GT	AGG
(ACA)	 AG	6074-6206	GT	AGG
(GGG)	 AG	8586-8687	GT	GGG
(TCT)	 AG	10113-10207	GT	CGG
(GGA)	 AG	11862-12050	GT	AGG
-recovered snap_scaffold_147-snap.1-T1, internal, 643, 733
-recovered snap_scaffold_147-snap.1-T1, internal, 1254, 1397
-recovered snap_scaffold_147-snap.1-T1, internal, 1418, 1672
-recovered snap_scaffold_147-snap.1-T1, internal, 1970, 2087
-recovered snap_scaffold_147-snap.1-T1, internal, 2936, 3030
-recovered snap_scaffold_147-snap.1-T1, internal, 4112, 4157
-recovered snap_scaffold_147-snap.1-T1, internal, 6074, 6206
-recovered snap_scaffold_147-snap.1-T1, internal, 8586, 8687
-recovered snap_scaffold_147-snap.1-T1, internal, 10113, 10207
-recovered snap_scaffold_147-snap.1-T1, internal, 11862, 12050
Couldn't classify 11848, 12050
Sorry, prediction GlimmerHMM_glimmerT_59893-T1 fails validation.
(ATG)	 CG	10169-10197	GT	AAG
(TAG)	 AG	11848-12050	GT	AGG
-recovered GlimmerHMM_glimmerT_59893-T1, initial, 10169, 10197
-recovered GlimmerHMM_glimmerT_59893-T1, internal, 11848, 12050

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 11444, 11659
Sorry, prediction snap_scaffold_147-snap.2-T1 fails validation.
(ATG)	 GG	4410-4535	GT	GTG
(AGG)	 AG	7802-7932	GT	TGG
(GTC)	 AG	8343-8638	GT	GGG
(GTG)	 AG	10082-10221	GT	AGG
(GAG)	 AG	10532-10642	GT	AGG
(CTT)	 AG	10782-10867	GT	AGG
(CTT)	 AG	10962-11154	GT	AGG
(GAC)	 AG	11444-11659	GT	AGG
-recovered snap_scaffold_147-snap.2-T1, initial, 4410, 4535
-recovered snap_scaffold_147-snap.2-T1, internal, 7802, 7932
-recovered snap_scaffold_147-snap.2-T1, internal, 8343, 8638
-recovered snap_scaffold_147-snap.2-T1, internal, 10082, 10221
-recovered snap_scaffold_147-snap.2-T1, internal, 10532, 10642
-recovered snap_scaffold_147-snap.2-T1, internal, 10782, 10867
-recovered snap_scaffold_147-snap.2-T1, internal, 10962, 11154
-recovered snap_scaffold_147-snap.2-T1, internal, 11444, 11659
Valid prediction for snap_scaffold_147-snap.3-T1
Valid prediction for Augustus_model.g39672.t1
Valid prediction for GlimmerHMM_glimmerT_59892-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 12050, rend_intergenic: 940  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 12598
-exon list size: 42


building trellis

2.3    
4.5    
6.8    
9.1    
11.4    
13.6    
15.9    
18.2    
20.5    
22.7    
25.0    
27.3    
29.5    
31.8    
34.1    
36.4    
38.6    
40.9    
43.2    
45.5    
47.7    
50.0    
52.3    
54.5    
56.8    
59.1    
61.4    
63.6    
65.9    
68.2    
70.5    
72.7    
75.0    
77.3    
79.5    
81.8    
84.1    
86.4    
88.6    
90.9    
93.2    
95.5    
97.7    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 12050, rend_intergenic: 940  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support