-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1468

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 63, 253
Sorry, prediction Augustus_model.g40508.t1 fails validation.
(CTC)	 AG	63-253	GT	ACG
(TGT)	 AG	1241-1369	AG	GAA
-recovered Augustus_model.g40508.t1, terminal, 1241, 1369
-recovered Augustus_model.g40508.t1, internal, 63, 253

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1902, 2119
Sorry, prediction snap_scaffold_1468-snap.1-T1 fails validation.
(ATG)	 AC	834-841	GT	AGG
(CTT)	 AG	1002-1061	GT	CGG
(GGC)	 AG	1902-2119	GT	ACG
-recovered snap_scaffold_1468-snap.1-T1, initial, 834, 841
-recovered snap_scaffold_1468-snap.1-T1, internal, 1002, 1061
-recovered snap_scaffold_1468-snap.1-T1, internal, 1902, 2119
Valid prediction for GlimmerHMM_glimmerT_61160-T1
Valid prediction for GlimmerHMM_glimmerT_61161-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2372
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support