-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1467

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g40507.t1
add_exon() Sorry, Augustus_model.g40507.t1 342-537-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 496, 637
Sorry, prediction GlimmerHMM_glimmerT_61159-T1 fails validation.
(AGG)	 AG	496-637	GT	ATG
(GTT)	 AG	1151-1197	GA	AAG
-recovered GlimmerHMM_glimmerT_61159-T1, terminal, 1151, 1197
-recovered GlimmerHMM_glimmerT_61159-T1, internal, 496, 637
Couldn't classify 1929, 2113
Sorry, prediction snap_scaffold_1467-snap.1-T1 fails validation.
(ATG)	 CA	1043-1326	GT	ACG
(GTG)	 AG	1929-2113	GT	AGG
-recovered snap_scaffold_1467-snap.1-T1, initial, 1043, 1326
-recovered snap_scaffold_1467-snap.1-T1, internal, 1929, 2113
Valid prediction for snap_scaffold_1467-snap.2-T1
Valid prediction for GlimmerHMM_glimmerT_61158-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2372
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support