-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1466

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 188, 295
Couldn't classify 2242, 2358
Sorry, prediction pasa_asmbl_13890.p1 fails validation.
(ATC)	 CC	188-295	GT	AGG
(ATG)	 AG	472-700	GT	AGG
(ACC)	 AG	1173-1318	GT	AGG
(GGT)	 AG	1793-1969	GT	GGG
(CTA)	 AG	2242-2358	AC	TCA
-recovered pasa_asmbl_13890.p1, initial, 472, 700
-recovered pasa_asmbl_13890.p1, internal, 472, 700
-recovered pasa_asmbl_13890.p1, internal, 1173, 1318
-recovered pasa_asmbl_13890.p1, internal, 1793, 1969
Couldn't classify 2242, 2373
Sorry, prediction GlimmerHMM_glimmerT_61157-T1 fails validation.
(ATG)	 AG	472-700	GT	AGG
(ACC)	 AG	1173-1318	GT	AGG
(GGT)	 AG	1793-1969	GT	GGG
(CTA)	 AG	2242-2373		TC
-recovered GlimmerHMM_glimmerT_61157-T1, initial, 472, 700
-recovered GlimmerHMM_glimmerT_61157-T1, internal, 472, 700
-recovered GlimmerHMM_glimmerT_61157-T1, internal, 1173, 1318
-recovered GlimmerHMM_glimmerT_61157-T1, internal, 1793, 1969
Couldn't classify 2242, 2370
Sorry, prediction snap_scaffold_1466-snap.1-T1 fails validation.
(ATG)	 AC	36-73	GT	AGG
(AGG)	 AG	181-295	GT	AGG
(ATG)	 AG	472-700	GT	AGG
(ACC)	 AG	1173-1318	GT	AGG
(GGT)	 AG	1793-1969	GT	GGG
(CTA)	 AG	2242-2370	GT	GCG
-recovered snap_scaffold_1466-snap.1-T1, initial, 36, 73
-recovered snap_scaffold_1466-snap.1-T1, initial, 472, 700
-recovered snap_scaffold_1466-snap.1-T1, internal, 181, 295
-recovered snap_scaffold_1466-snap.1-T1, internal, 472, 700
-recovered snap_scaffold_1466-snap.1-T1, internal, 1173, 1318
-recovered snap_scaffold_1466-snap.1-T1, internal, 1793, 1969
-recovered snap_scaffold_1466-snap.1-T1, internal, 2242, 2370
Couldn't classify 1, 73
Couldn't classify 2242, 2373
Sorry, prediction Augustus_model.g40506.t1 fails validation.
(GCA)	 TC	1-73	GT	AGG
(AGG)	 AG	181-295	GT	AGG
(ATG)	 AG	472-700	GT	AGG
(ACC)	 AG	1173-1318	GT	AGG
(GGT)	 AG	1793-1969	GT	GGG
(CTA)	 AG	2242-2373		TC
-recovered Augustus_model.g40506.t1, initial, 472, 700
-recovered Augustus_model.g40506.t1, internal, 181, 295
-recovered Augustus_model.g40506.t1, internal, 472, 700
-recovered Augustus_model.g40506.t1, internal, 1173, 1318
-recovered Augustus_model.g40506.t1, internal, 1793, 1969
Valid prediction for GlimmerHMM_glimmerT_61156-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61156-T1 181-376-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2373
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support