-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1455

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 780, 897
Sorry, prediction GlimmerHMM_glimmerT_61153-T1 fails validation.
(AAG)	 AG	780-897	GT	ACG
(AAG)	 AG	1000-1089	GT	AGG
-recovered GlimmerHMM_glimmerT_61153-T1, terminal, 1000, 1089
-recovered GlimmerHMM_glimmerT_61153-T1, internal, 780, 897
-recovered GlimmerHMM_glimmerT_61153-T1, internal, 1000, 1089
Couldn't classify 780, 869
Couldn't classify 1848, 1966
Sorry, prediction Augustus_model.g40503.t1 fails validation.
(AAG)	 AG	780-869	GT	AGG
(AAG)	 AG	1000-1117	GT	ACG
(ATG)	 AG	1848-1966	GT	AGG
-recovered Augustus_model.g40503.t1, initial, 1848, 1966
-recovered Augustus_model.g40503.t1, terminal, 780, 869
-recovered Augustus_model.g40503.t1, internal, 780, 869
-recovered Augustus_model.g40503.t1, internal, 1000, 1117
-recovered Augustus_model.g40503.t1, internal, 1848, 1966
Couldn't classify 780, 869
Couldn't classify 1994, 2149
Sorry, prediction snap_scaffold_1455-snap.1-T1 fails validation.
(AAG)	 AG	780-869	GT	AGG
(AAG)	 AG	1000-1132	GT	GTG
(CGG)	 AG	1994-2149	GT	AGG
-recovered snap_scaffold_1455-snap.1-T1, terminal, 780, 869
-recovered snap_scaffold_1455-snap.1-T1, internal, 780, 869
-recovered snap_scaffold_1455-snap.1-T1, internal, 1000, 1132
-recovered snap_scaffold_1455-snap.1-T1, internal, 1994, 2149

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2394
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support