-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1453

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 282, 494
Sorry, prediction Augustus_model.g40501.t1 fails validation.
(TCA)	 AG	282-494	GT	TGG
(GCC)	 AG	1451-1537	GT	AGG
(AAC)	 AG	1782-1879	GT	AGG
(CAT)	 AG	2189-2252	CT	AGC
-recovered Augustus_model.g40501.t1, terminal, 2189, 2252
-recovered Augustus_model.g40501.t1, internal, 282, 494
-recovered Augustus_model.g40501.t1, internal, 1451, 1537
-recovered Augustus_model.g40501.t1, internal, 1782, 1879
Valid prediction for GlimmerHMM_glimmerT_61152-T1
Couldn't classify 223, 494
Sorry, prediction snap_scaffold_1453-snap.1-T1 fails validation.
(GAC)	 AG	223-494	GT	TGG
(GCC)	 AG	1451-1537	GT	AGG
(AAC)	 AG	1782-1874	GT	ACG
(TTC)	 AG	2005-2044	GT	AAG
(GAG)	 AG	2229-2374	CC	AGC
-recovered snap_scaffold_1453-snap.1-T1, terminal, 2229, 2374
-recovered snap_scaffold_1453-snap.1-T1, internal, 223, 494
-recovered snap_scaffold_1453-snap.1-T1, internal, 1451, 1537
-recovered snap_scaffold_1453-snap.1-T1, internal, 1782, 1874
-recovered snap_scaffold_1453-snap.1-T1, internal, 2005, 2044

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 416, 528
Couldn't classify 1900, 2038
Sorry, prediction snap_scaffold_1453-snap.2-T1 fails validation.
(GGA)	 AG	416-528	GT	GGG
(ACC)	 AG	1900-2038	GT	ACG
-recovered snap_scaffold_1453-snap.2-T1, internal, 416, 528
-recovered snap_scaffold_1453-snap.2-T1, internal, 1900, 2038

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2374, rend_intergenic: 358  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2395
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2374, rend_intergenic: 358  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support