-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_145

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_145-snap.4-T1
Couldn't classify 4908, 5066
Sorry, prediction snap_scaffold_145-snap.3-T1 fails validation.
(CTC)	 AG	4908-5066	GT	GGG
(AGC)	 AG	7027-7147	GT	GTG
(GAT)	 AG	8737-8886	TA	AGT
-recovered snap_scaffold_145-snap.3-T1, terminal, 8737, 8886
-recovered snap_scaffold_145-snap.3-T1, internal, 4908, 5066
-recovered snap_scaffold_145-snap.3-T1, internal, 7027, 7147
Valid prediction for GlimmerHMM_glimmerT_59888-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_59887-T1
Valid prediction for GlimmerHMM_glimmerT_59886-T1
Couldn't classify 9750, 9787
Couldn't classify 11795, 11933
Sorry, prediction pasa_asmbl_13887.p1 fails validation.
(GGA)	 GT	9750-9787	GT	AGG
(GTA)	 AG	10349-10558	GT	AAG
(GAA)	 AG	11795-11933	TG	TGT
-recovered pasa_asmbl_13887.p1, internal, 10349, 10558
Valid prediction for GlimmerHMM_glimmerT_59885-T1
Couldn't classify 11795, 11934
Sorry, prediction Augustus_model.g39669.t1 fails validation.
(ATG)	 AT	3678-3878	GT	TGG
(GAA)	 AG	5412-5592	GT	GGG
(GCC)	 AG	6334-6443	GT	CTG
(GAG)	 AG	7519-7690	GT	TGG
(CGC)	 AG	8347-8379	GT	ATG
(GTG)	 AG	8637-8758	GT	AGG
(GAC)	 AG	9300-9407	GT	AGG
(GGC)	 AG	9681-9787	GT	AGG
(GTA)	 AG	10349-10558	GT	AAG
(GAA)	 AG	11795-11934	GT	GTG
-recovered Augustus_model.g39669.t1, initial, 3678, 3878
-recovered Augustus_model.g39669.t1, internal, 5412, 5592
-recovered Augustus_model.g39669.t1, internal, 6334, 6443
-recovered Augustus_model.g39669.t1, internal, 7519, 7690
-recovered Augustus_model.g39669.t1, internal, 8347, 8379
-recovered Augustus_model.g39669.t1, internal, 8637, 8758
-recovered Augustus_model.g39669.t1, internal, 9300, 9407
-recovered Augustus_model.g39669.t1, internal, 9681, 9787
-recovered Augustus_model.g39669.t1, internal, 10349, 10558
-recovered Augustus_model.g39669.t1, internal, 11795, 11934
Couldn't classify 1449, 1528
Sorry, prediction snap_scaffold_145-snap.2-T1 fails validation.
(AGT)	 AG	1449-1528	GT	GGG
(TTT)	 AG	3665-3878	GT	TGG
(GAA)	 AG	5412-5592	GT	GGG
(GCC)	 AG	6334-6443	GT	CTG
(GAG)	 AG	7519-7690	GT	TGG
(GTC)	 AG	8375-8506	GT	AGG
(GTG)	 AG	8637-8713	GT	AGG
(GAC)	 AG	9300-9407	GT	AGG
(GGC)	 AG	9681-9791	GG	GAG
-recovered snap_scaffold_145-snap.2-T1, terminal, 9681, 9791
-recovered snap_scaffold_145-snap.2-T1, internal, 1449, 1528
-recovered snap_scaffold_145-snap.2-T1, internal, 3665, 3878
-recovered snap_scaffold_145-snap.2-T1, internal, 5412, 5592
-recovered snap_scaffold_145-snap.2-T1, internal, 6334, 6443
-recovered snap_scaffold_145-snap.2-T1, internal, 7519, 7690
-recovered snap_scaffold_145-snap.2-T1, internal, 8375, 8506
-recovered snap_scaffold_145-snap.2-T1, internal, 8637, 8713
-recovered snap_scaffold_145-snap.2-T1, internal, 9300, 9407
Couldn't classify 11795, 11930
Sorry, prediction snap_scaffold_145-snap.1-T1 fails validation.
(ATG)	 AG	9815-10058	GT	AGG
(GGG)	 AG	10083-10324	GT	CTG
(CAT)	 AG	10383-10558	GT	AAG
(GAA)	 AG	11795-11930	GT	CAG
-recovered snap_scaffold_145-snap.1-T1, initial, 9815, 10058
-recovered snap_scaffold_145-snap.1-T1, internal, 9815, 10058
-recovered snap_scaffold_145-snap.1-T1, internal, 10083, 10324
-recovered snap_scaffold_145-snap.1-T1, internal, 10383, 10558
-recovered snap_scaffold_145-snap.1-T1, internal, 11795, 11930

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 11163, rend_intergenic: 4908  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 12611
-exon list size: 41


building trellis

2.3    
4.7    
7.0    
9.3    
11.6    
14.0    
16.3    
18.6    
20.9    
23.3    
25.6    
27.9    
30.2    
32.6    
34.9    
37.2    
39.5    
41.9    
44.2    
46.5    
48.8    
51.2    
53.5    
55.8    
58.1    
60.5    
62.8    
65.1    
67.4    
69.8    
72.1    
74.4    
76.7    
79.1    
81.4    
83.7    
86.0    
88.4    
90.7    
93.0    
95.3    
97.7    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 11163, rend_intergenic: 4908  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support