-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1448

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_61149-T1
Couldn't classify 50, 191
Couldn't classify 2038, 2157
Sorry, prediction snap_scaffold_1448-snap.1-T1 fails validation.
(ATC)	 AG	50-191	GT	AGG
(AAC)	 AG	1566-1609	GT	TGG
(GTT)	 AG	1621-1895	GT	AAG
(CCC)	 AG	2038-2157	GT	TGG
-recovered snap_scaffold_1448-snap.1-T1, internal, 50, 191
-recovered snap_scaffold_1448-snap.1-T1, internal, 1566, 1609
-recovered snap_scaffold_1448-snap.1-T1, internal, 1621, 1895
-recovered snap_scaffold_1448-snap.1-T1, internal, 2038, 2157
Couldn't classify 1, 191
Sorry, prediction Augustus_model.g40499.t1 fails validation.
(CCT)	 AG	1-191	GT	AGG
(AGC)	 AG	1007-1020	CA	GAC
-recovered Augustus_model.g40499.t1, terminal, 1007, 1020

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2406
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support