-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_144

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g39667.t1
Valid prediction for snap_scaffold_144-snap.2-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1692, 1833
Sorry, prediction pasa_asmbl_13883.p1 fails validation.
(TCC)	 CG	1692-1833	GT	AGG
(CTC)	 AG	1944-2204	GT	AGG
(CTC)	 AG	2401-2706	GT	AGG
(AAG)	 AG	2879-2965	GT	AAG
(GAG)	 AG	3082-3185	AT	AGA
-recovered pasa_asmbl_13883.p1, terminal, 3082, 3185
-recovered pasa_asmbl_13883.p1, internal, 1944, 2204
-recovered pasa_asmbl_13883.p1, internal, 2401, 2706
-recovered pasa_asmbl_13883.p1, internal, 2879, 2965
Valid prediction for Augustus_model.g39668.t1
Couldn't classify 10962, 10992
Couldn't classify 11188, 11495
Sorry, prediction pasa_asmbl_13880.p1 fails validation.
(CGG)	 AT	10962-10992	GT	AGG
(CTC)	 AG	11188-11495	GG	AAG
Valid prediction for snap_scaffold_144-snap.3-T1
Couldn't classify 1567, 1833
Sorry, prediction GlimmerHMM_glimmerT_59884-T1 fails validation.
(CAG)	 AG	1567-1833	GT	AGG
(CTC)	 AG	1944-2204	GT	AGG
(CTC)	 AG	2401-2570	GT	AGG
(AAC)	 AG	3480-3591	GT	CTG
(TAT)	 AG	10472-10600	GT	AGG
(CTC)	 AG	10713-10844	GT	TTG
(CTC)	 AG	11188-11534	AC	AAA
-recovered GlimmerHMM_glimmerT_59884-T1, terminal, 11188, 11534
-recovered GlimmerHMM_glimmerT_59884-T1, internal, 1567, 1833
-recovered GlimmerHMM_glimmerT_59884-T1, internal, 1944, 2204
-recovered GlimmerHMM_glimmerT_59884-T1, internal, 2401, 2570
-recovered GlimmerHMM_glimmerT_59884-T1, internal, 3480, 3591
-recovered GlimmerHMM_glimmerT_59884-T1, internal, 10472, 10600
-recovered GlimmerHMM_glimmerT_59884-T1, internal, 10713, 10844
Couldn't classify 11653, 11748
Sorry, prediction Augustus_model.g39666.t1 fails validation.
(ATG)	 GT	9632-9674	GT	AGG
(ACG)	 AG	10273-10368	GT	AGG
(TAT)	 AG	10472-10600	GT	AGG
(TTC)	 AG	10763-10837	GT	CTG
(AGT)	 AG	10948-10992	GT	AGG
(CTC)	 AG	11188-11496	GT	AGG
(CAG)	 AG	11653-11748	GT	AAG
-recovered Augustus_model.g39666.t1, initial, 9632, 9674
-recovered Augustus_model.g39666.t1, internal, 10273, 10368
-recovered Augustus_model.g39666.t1, internal, 10472, 10600
-recovered Augustus_model.g39666.t1, internal, 10763, 10837
-recovered Augustus_model.g39666.t1, internal, 10948, 10992
-recovered Augustus_model.g39666.t1, internal, 11188, 11496
-recovered Augustus_model.g39666.t1, internal, 11653, 11748
Valid prediction for snap_scaffold_144-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 12646
-exon list size: 36


building trellis

2.6    
5.3    
7.9    
10.5    
13.2    
15.8    
18.4    
21.1    
23.7    
26.3    
28.9    
31.6    
34.2    
36.8    
39.5    
42.1    
44.7    
47.4    
50.0    
52.6    
55.3    
57.9    
60.5    
63.2    
65.8    
68.4    
71.1    
73.7    
76.3    
78.9    
81.6    
84.2    
86.8    
89.5    
92.1    
94.7    
97.4    
-found 3 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 3 predictions persist after filtering for low support