-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1439

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2227, 2320
Sorry, prediction GlimmerHMM_glimmerT_61145-T1 fails validation.
(ATG)	 AC	38-171	GT	TCG
(GGT)	 AG	494-627	GT	GGG
(CGG)	 AG	2227-2320	GT	AGG
-recovered GlimmerHMM_glimmerT_61145-T1, initial, 38, 171
-recovered GlimmerHMM_glimmerT_61145-T1, internal, 494, 627
-recovered GlimmerHMM_glimmerT_61145-T1, internal, 2227, 2320

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 47, 197
Couldn't classify 2209, 2400
Sorry, prediction Augustus_model.g40497.t1 fails validation.
(GAG)	 AG	47-197	GT	AGG
(CTG)	 AG	1772-1928	GT	TGG
(AGC)	 AG	2209-2400	GT	GGG
-recovered Augustus_model.g40497.t1, internal, 47, 197
-recovered Augustus_model.g40497.t1, internal, 1772, 1928
-recovered Augustus_model.g40497.t1, internal, 2209, 2400
Couldn't classify 47, 197
Couldn't classify 2209, 2400
Sorry, prediction snap_scaffold_1439-snap.1-T1 fails validation.
(GAG)	 AG	47-197	GT	AGG
(CTG)	 AG	1772-1928	GT	TGG
(AGC)	 AG	2209-2400	GT	GGG
-recovered snap_scaffold_1439-snap.1-T1, internal, 47, 197
-recovered snap_scaffold_1439-snap.1-T1, internal, 1772, 1928
-recovered snap_scaffold_1439-snap.1-T1, internal, 2209, 2400

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2418
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support