-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1434

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61143-T1
Valid prediction for GlimmerHMM_glimmerT_61142-T1
Couldn't classify 2128, 2428
Sorry, prediction Augustus_model.g40495.t1 fails validation.
(ATG)	 TG	2128-2428		CC
Valid prediction for Augustus_model.g40496.t1
Couldn't classify 2144, 2387
Sorry, prediction snap_scaffold_1434-snap.1-T1 fails validation.
(ATG)	 AC	1235-1870	GT	CAG
(TCA)	 AG	1980-2139	GT	TGG
(GTC)	 AG	2144-2387	GT	AAG
-recovered snap_scaffold_1434-snap.1-T1, initial, 1235, 1870
-recovered snap_scaffold_1434-snap.1-T1, internal, 1980, 2139
-recovered snap_scaffold_1434-snap.1-T1, internal, 2144, 2387
Sorry, intron length (3) is less than minimum required (10)

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2428
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support