-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_143

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 12471, 12605
Sorry, prediction GlimmerHMM_glimmerT_59883-T1 fails validation.
(ATG)	 GG	3772-3780	GT	AGG
(AAC)	 AG	7202-7282	GT	ATG
(GTG)	 AG	7456-7551	GT	CTG
(ACG)	 AG	11856-12008	GT	CTG
(GGC)	 AG	12471-12605	GT	AGG
-recovered GlimmerHMM_glimmerT_59883-T1, initial, 3772, 3780
-recovered GlimmerHMM_glimmerT_59883-T1, internal, 7202, 7282
-recovered GlimmerHMM_glimmerT_59883-T1, internal, 7456, 7551
-recovered GlimmerHMM_glimmerT_59883-T1, internal, 11856, 12008
-recovered GlimmerHMM_glimmerT_59883-T1, internal, 12471, 12605
Valid prediction for snap_scaffold_143-snap.1-T1
Valid prediction for Augustus_model.g39664.t1
Valid prediction for GlimmerHMM_glimmerT_59882-T1
add_exon() Sorry, GlimmerHMM_glimmerT_59882-T1 3013-3199-terminal-1 is invalid.
Valid prediction for snap_scaffold_143-snap.2-T1
Couldn't classify 12471, 12605
Sorry, prediction Augustus_model.g39665.t1 fails validation.
(ATG)	 AC	7118-7282	GT	ATG
(GTG)	 AG	7456-7551	GT	CTG
(ACG)	 AG	11856-12008	GT	CTG
(GGC)	 AG	12471-12605	GT	AGG
-recovered Augustus_model.g39665.t1, initial, 7118, 7282
-recovered Augustus_model.g39665.t1, internal, 7456, 7551
-recovered Augustus_model.g39665.t1, internal, 11856, 12008
-recovered Augustus_model.g39665.t1, internal, 12471, 12605

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_143-snap.3-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 12083, rend_intergenic: 7078  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 12759
-exon list size: 23


building trellis

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-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 12083, rend_intergenic: 7078  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support