-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1425

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1, 198
Sorry, prediction Augustus_model.g40492.t1 fails validation.
(CCA)	 TG	1-198	GT	GGG
(GGA)	 AG	314-697	GT	AGG
(TCC)	 AG	2117-2250	TC	AGT
-recovered Augustus_model.g40492.t1, terminal, 2117, 2250
-recovered Augustus_model.g40492.t1, internal, 314, 697
Couldn't classify 314, 699
Sorry, prediction pasa_asmbl_13878.p1 fails validation.
(ATG)	 TG	45-198	GT	GGG
(GGA)	 AG	314-699	AA	GTA
-recovered pasa_asmbl_13878.p1, initial, 45, 198
Couldn't classify 314, 697
Sorry, prediction GlimmerHMM_glimmerT_61140-T1 fails validation.
(ATG)	 TG	45-198	GT	GGG
(GGA)	 AG	314-697	GT	AGG
-recovered GlimmerHMM_glimmerT_61140-T1, initial, 45, 198
-recovered GlimmerHMM_glimmerT_61140-T1, internal, 314, 697
Couldn't classify 2128, 2245
Sorry, prediction snap_scaffold_1425-snap.1-T1 fails validation.
(ATG)	 TG	45-198	GT	GGG
(GGA)	 AG	314-697	GT	AGG
(CCT)	 AG	2128-2245	GT	TTG
-recovered snap_scaffold_1425-snap.1-T1, initial, 45, 198
-recovered snap_scaffold_1425-snap.1-T1, internal, 314, 697
-recovered snap_scaffold_1425-snap.1-T1, internal, 2128, 2245

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2444
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support