-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1421

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2036, 2443
Sorry, prediction snap_scaffold_1421-snap.1-T1 fails validation.
(ATG)	 AG	11-694	GT	AGG
(GGT)	 AG	1621-1716	GT	AGG
(GAT)	 AG	2036-2443	GT	AGG
-recovered snap_scaffold_1421-snap.1-T1, initial, 11, 694
-recovered snap_scaffold_1421-snap.1-T1, internal, 11, 694
-recovered snap_scaffold_1421-snap.1-T1, internal, 1621, 1716
-recovered snap_scaffold_1421-snap.1-T1, internal, 2036, 2443
Valid prediction for GlimmerHMM_glimmerT_61138-T1
Valid prediction for GlimmerHMM_glimmerT_61137-T1
Couldn't classify 1595, 1716
Couldn't classify 2036, 2443
Sorry, prediction Augustus_model.g40490.t1 fails validation.
(TTT)	 AG	1595-1716	GT	AGG
(GAT)	 AG	2036-2443	GT	AGG
-recovered Augustus_model.g40490.t1, internal, 1595, 1716
-recovered Augustus_model.g40490.t1, internal, 2036, 2443

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2461
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support