-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_142

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_142-snap.3-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_59880-T1
Valid prediction for Augustus_model.g39663.t1
Valid prediction for snap_scaffold_142-snap.1-T1
Valid prediction for snap_scaffold_142-snap.2-T1
Couldn't classify 4638, 4860
Sorry, prediction GlimmerHMM_glimmerT_59881-T1 fails validation.
(AGG)	 AG	4638-4860	GT	AGG
(TTG)	 AG	8072-8191	CC	GAC
-recovered GlimmerHMM_glimmerT_59881-T1, terminal, 8072, 8191
-recovered GlimmerHMM_glimmerT_59881-T1, internal, 4638, 4860

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9209, rend_intergenic: 4583  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 12906
-exon list size: 18


building trellis

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-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 9209, rend_intergenic: 4583  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support