-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1411

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 193, 272
Couldn't classify 2222, 2437
Sorry, prediction snap_scaffold_1411-snap.1-T1 fails validation.
(GGG)	 AG	193-272	GT	AGG
(ACC)	 AG	2222-2437	GT	GAG
-recovered snap_scaffold_1411-snap.1-T1, internal, 193, 272
-recovered snap_scaffold_1411-snap.1-T1, internal, 2222, 2437
Couldn't classify 193, 248
Sorry, prediction Augustus_model.g40488.t1 fails validation.
(GGG)	 AG	193-248	GT	CTG
(ACA)	 AG	600-679	AT	AAA
-recovered Augustus_model.g40488.t1, terminal, 600, 679
-recovered Augustus_model.g40488.t1, internal, 193, 248

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 492, 586
Sorry, prediction snap_scaffold_1411-snap.2-T1 fails validation.
(AGA)	 AG	492-586	GT	GTG
(GGA)	 AG	827-912	GT	AGG
(ATT)	 AG	1653-1659	AA	AAA
-recovered snap_scaffold_1411-snap.2-T1, terminal, 1653, 1659
-recovered snap_scaffold_1411-snap.2-T1, internal, 492, 586
-recovered snap_scaffold_1411-snap.2-T1, internal, 827, 912

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2437, rend_intergenic: 821  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2479
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2437, rend_intergenic: 821  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support