-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1410

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_61136-T1
Valid prediction for GlimmerHMM_glimmerT_61135-T1
Couldn't classify 248, 351
Couldn't classify 1488, 1648
Sorry, prediction snap_scaffold_1410-snap.1-T1 fails validation.
(GCC)	 AG	248-351	GT	CGG
(CCG)	 AG	489-607	GT	GGG
(ATC)	 AG	982-1127	GT	AAG
(ATC)	 AG	1488-1648	GT	AGG
-recovered snap_scaffold_1410-snap.1-T1, internal, 248, 351
-recovered snap_scaffold_1410-snap.1-T1, internal, 489, 607
-recovered snap_scaffold_1410-snap.1-T1, internal, 982, 1127
-recovered snap_scaffold_1410-snap.1-T1, internal, 1488, 1648

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2479
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support