-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_141

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 421, 629
Sorry, prediction snap_scaffold_141-snap.2-T1 fails validation.
(GCC)	 AG	421-629	GT	AAG
(GGG)	 AG	3573-3681	GT	GAG
(TCC)	 AG	3752-3852	GT	ATG
(GTG)	 AG	3943-3975	AC	AAA
-recovered snap_scaffold_141-snap.2-T1, terminal, 3943, 3975
-recovered snap_scaffold_141-snap.2-T1, internal, 421, 629
-recovered snap_scaffold_141-snap.2-T1, internal, 3573, 3681
-recovered snap_scaffold_141-snap.2-T1, internal, 3752, 3852
Valid prediction for GlimmerHMM_glimmerT_59879-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_59877-T1
Valid prediction for snap_scaffold_141-snap.3-T1
Valid prediction for GlimmerHMM_glimmerT_59878-T1
Valid prediction for snap_scaffold_141-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3883, rend_intergenic: 421  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 12926
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 3883, rend_intergenic: 421  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support