-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_14/scaffold_14_9628136-9844262

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_34472-T1
Valid prediction for snap_scaffold_14-snap.2003-T1
Valid prediction for snap_scaffold_14-snap.1997-T1
Valid prediction for GlimmerHMM_glimmerT_34490-T1
Valid prediction for snap_scaffold_14-snap.2020-T1
Valid prediction for GlimmerHMM_glimmerT_34479-T1
Valid prediction for snap_scaffold_14-snap.2001-T1
Valid prediction for Augustus_model.g23033.t1
Valid prediction for GlimmerHMM_glimmerT_34483-T1
Valid prediction for Augustus_model.g23040.t1
Valid prediction for snap_scaffold_14-snap.1981-T1
Valid prediction for snap_scaffold_14-snap.2008-T1
Valid prediction for snap_scaffold_14-snap.1985-T1
Valid prediction for snap_scaffold_14-snap.1987-T1
Valid prediction for GlimmerHMM_glimmerT_34484-T1
Valid prediction for snap_scaffold_14-snap.1992-T1
Valid prediction for snap_scaffold_14-snap.2019-T1
Valid prediction for GlimmerHMM_glimmerT_34489-T1
Valid prediction for snap_scaffold_14-snap.2004-T1
Valid prediction for snap_scaffold_14-snap.1984-T1
Valid prediction for HiQ_model.g23029.t1
Valid prediction for snap_scaffold_14-snap.2025-T1
Valid prediction for GlimmerHMM_glimmerT_34486-T1
Valid prediction for GlimmerHMM_glimmerT_34497-T1
Valid prediction for pasa_asmbl_12296.p1
Valid prediction for Augustus_model.g23030.t1
Valid prediction for snap_scaffold_14-snap.1991-T1
Valid prediction for snap_scaffold_14-snap.2022-T1
Valid prediction for snap_scaffold_14-snap.1990-T1
Valid prediction for GlimmerHMM_glimmerT_34480-T1
Valid prediction for snap_scaffold_14-snap.2021-T1
Valid prediction for GlimmerHMM_glimmerT_34493-T1
Valid prediction for GlimmerHMM_glimmerT_34474-T1
Valid prediction for snap_scaffold_14-snap.1983-T1
Valid prediction for snap_scaffold_14-snap.2010-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_14-snap.2015-T1
Valid prediction for GlimmerHMM_glimmerT_34499-T1
Valid prediction for snap_scaffold_14-snap.1996-T1
Valid prediction for GlimmerHMM_glimmerT_34488-T1
Valid prediction for snap_scaffold_14-snap.2007-T1
Valid prediction for snap_scaffold_14-snap.2013-T1
Valid prediction for Augustus_model.g23036.t1
Valid prediction for GlimmerHMM_glimmerT_34481-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for pasa_asmbl_13389.p1
Valid prediction for Augustus_model.g23034.t1
Valid prediction for snap_scaffold_14-snap.1998-T1
Valid prediction for HiQ_model.g23027.t1
Valid prediction for snap_scaffold_14-snap.2016-T1
Valid prediction for GlimmerHMM_glimmerT_34478-T1
Valid prediction for snap_scaffold_14-snap.2023-T1
Valid prediction for snap_scaffold_14-snap.2006-T1
Valid prediction for Augustus_model.g23031.t1
Valid prediction for Augustus_model.g23041.t1
Valid prediction for GlimmerHMM_glimmerT_34498-T1
Valid prediction for Augustus_model.g23035.t1
Valid prediction for snap_scaffold_14-snap.2017-T1
Valid prediction for snap_scaffold_14-snap.2000-T1
Valid prediction for snap_scaffold_14-snap.1988-T1
Valid prediction for snap_scaffold_14-snap.1994-T1
Valid prediction for Augustus_model.g23028.t1
Valid prediction for GlimmerHMM_glimmerT_34496-T1
Valid prediction for GlimmerHMM_glimmerT_34477-T1
Valid prediction for Augustus_model.g23038.t1
Valid prediction for Augustus_model.g23039.t1
Valid prediction for GlimmerHMM_glimmerT_34487-T1
Valid prediction for snap_scaffold_14-snap.1995-T1
Valid prediction for snap_scaffold_14-snap.2009-T1
Valid prediction for snap_scaffold_14-snap.2012-T1
Valid prediction for GlimmerHMM_glimmerT_34494-T1
Valid prediction for snap_scaffold_14-snap.2018-T1
Valid prediction for GlimmerHMM_glimmerT_34491-T1
Valid prediction for GlimmerHMM_glimmerT_34475-T1
Valid prediction for GlimmerHMM_glimmerT_34471-T1
Valid prediction for GlimmerHMM_glimmerT_34492-T1
Valid prediction for snap_scaffold_14-snap.1999-T1
Valid prediction for snap_scaffold_14-snap.1986-T1
Valid prediction for GlimmerHMM_glimmerT_34501-T1
Valid prediction for GlimmerHMM_glimmerT_34485-T1
Valid prediction for Augustus_model.g23032.t1
Valid prediction for Augustus_model.g23026.t1
Couldn't classify 168350, 168529
Sorry, prediction pasa_asmbl_13393.p1 fails validation.
(GGT)	 AA	168350-168529	GT	AGG
(GTG)	 AG	168677-168727	GT	AGG
(GAA)	 AG	168938-169186	CA	GAC
-recovered pasa_asmbl_13393.p1, terminal, 168938, 169186
-recovered pasa_asmbl_13393.p1, internal, 168677, 168727
Valid prediction for GlimmerHMM_glimmerT_34476-T1
Valid prediction for snap_scaffold_14-snap.1989-T1
Valid prediction for snap_scaffold_14-snap.2002-T1
Valid prediction for snap_scaffold_14-snap.2011-T1
Valid prediction for snap_scaffold_14-snap.1993-T1
Valid prediction for CodingQuarry_transcript_15797-T1
Valid prediction for snap_scaffold_14-snap.1980-T1
Valid prediction for snap_scaffold_14-snap.2024-T1
Valid prediction for snap_scaffold_14-snap.2014-T1
Valid prediction for Augustus_model.g23037.t1
Valid prediction for GlimmerHMM_glimmerT_34482-T1
Valid prediction for GlimmerHMM_glimmerT_34500-T1
Valid prediction for GlimmerHMM_glimmerT_34473-T1
Valid prediction for GlimmerHMM_glimmerT_34495-T1
Valid prediction for snap_scaffold_14-snap.2005-T1
Valid prediction for snap_scaffold_14-snap.1982-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 14542, rend_intergenic: 8483  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28821, rend_intergenic: 18018  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41769, rend_intergenic: 38284  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80834, rend_intergenic: 63527  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85643, rend_intergenic: 80871  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92766, rend_intergenic: 90090  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108239, rend_intergenic: 104816  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115645, rend_intergenic: 108436  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120551, rend_intergenic: 116890  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137956, rend_intergenic: 123489  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145793, rend_intergenic: 141713  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 154698, rend_intergenic: 154119  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 166042, rend_intergenic: 162879  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 186420, rend_intergenic: 183871  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 198303, rend_intergenic: 195468  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 216127
-exon list size: 404


building trellis

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23.9    
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25.9    
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26.4    
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27.6    
27.8    
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28.6    
28.8    
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29.6    
29.8    
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31.3    
31.5    
31.8    
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32.3    
32.5    
32.8    
33.0    
33.3    
33.5    
33.7    
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34.2    
34.5    
34.7    
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36.0    
36.2    
36.5    
36.7    
36.9    
37.2    
37.4    
37.7    
37.9    
38.2    
38.4    
38.7    
38.9    
39.2    
39.4    
39.7    
39.9    
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40.6    
40.9    
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41.6    
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42.4    
42.6    
42.9    
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43.6    
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44.3    
44.6    
44.8    
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45.6    
45.8    
46.1    
46.3    
46.6    
46.8    
47.0    
47.3    
47.5    
47.8    
48.0    
48.3    
48.5    
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49.3    
49.5    
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53.9    
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59.6    
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80.3    
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81.3    
81.5    
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82.3    
82.5    
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83.0    
83.3    
83.5    
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86.0    
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87.4    
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87.9    
88.2    
88.4    
88.7    
88.9    
89.2    
89.4    
89.7    
89.9    
90.1    
90.4    
90.6    
90.9    
91.1    
91.4    
91.6    
91.9    
92.1    
92.4    
92.6    
92.9    
93.1    
93.3    
93.6    
93.8    
94.1    
94.3    
94.6    
94.8    
95.1    
95.3    
95.6    
95.8    
96.1    
96.3    
96.6    
96.8    
97.0    
97.3    
97.5    
97.8    
98.0    
98.3    
98.5    
98.8    
99.0    
99.3    
99.5    
99.8    
-found 36 predictions from path traversal
Error with prediction: snap lend_intergenic: 14542, rend_intergenic: 8483  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28821, rend_intergenic: 18018  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41769, rend_intergenic: 38284  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80834, rend_intergenic: 63527  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85643, rend_intergenic: 80871  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92766, rend_intergenic: 90090  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108239, rend_intergenic: 104816  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115645, rend_intergenic: 108436  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120551, rend_intergenic: 116890  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137956, rend_intergenic: 123489  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145793, rend_intergenic: 141713  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 154698, rend_intergenic: 154119  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 166042, rend_intergenic: 162879  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 186420, rend_intergenic: 183871  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 198303, rend_intergenic: 195468  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 24 predictions persist after filtering for low support