-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_14/scaffold_14_9415524-9631697

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_14-snap.1968-T1
Valid prediction for GlimmerHMM_glimmerT_34457-T1
Valid prediction for snap_scaffold_14-snap.1947-T1
Valid prediction for CodingQuarry_transcript_15794-T1
Couldn't classify 23253, 23403
Couldn't classify 26268, 26363
Sorry, prediction pasa_asmbl_12769.p1 fails validation.
(TCA)	 CC	23253-23403	GT	GAG
(TCA)	 AG	24362-24414	GT	TGG
(ATA)	 AG	26268-26363	AG	AGA
-recovered pasa_asmbl_12769.p1, internal, 24362, 24414
Valid prediction for Augustus_model.g23022.t1
Valid prediction for HiQ_model.g23023.t1
Valid prediction for GlimmerHMM_glimmerT_34456-T1
Valid prediction for GlimmerHMM_glimmerT_34455-T1
Valid prediction for Augustus_model.g23021.t1
Valid prediction for snap_scaffold_14-snap.1941-T1
Valid prediction for Augustus_model.g23011.t1
Valid prediction for GlimmerHMM_glimmerT_34445-T1
Valid prediction for GlimmerHMM_glimmerT_34459-T1
Valid prediction for snap_scaffold_14-snap.1977-T1
Valid prediction for snap_scaffold_14-snap.1955-T1
Valid prediction for pasa_asmbl_12287.p1
Valid prediction for GlimmerHMM_glimmerT_34444-T1
Valid prediction for HiQ_model.g23014.t1
Valid prediction for snap_scaffold_14-snap.1964-T1
Valid prediction for snap_scaffold_14-snap.1951-T1
Valid prediction for snap_scaffold_14-snap.1950-T1
Valid prediction for GlimmerHMM_glimmerT_34453-T1
Valid prediction for Augustus_model.g23013.t1
Valid prediction for snap_scaffold_14-snap.1945-T1
Couldn't classify 35766, 35978
Couldn't classify 38073, 39551
Sorry, prediction pasa_asmbl_12282.p1 fails validation.
(AGG)	 CT	35766-35978	GT	CGG
(CAG)	 AG	38073-39551	AG	GCA
Valid prediction for pasa_asmbl_12292.p1
Valid prediction for snap_scaffold_14-snap.1948-T1
Valid prediction for CodingQuarry_transcript_15792-T1
Valid prediction for GlimmerHMM_glimmerT_34448-T1
Valid prediction for HiQ_model.g23016.t1
Valid prediction for snap_scaffold_14-snap.1952-T1
Valid prediction for snap_scaffold_14-snap.1960-T1
Valid prediction for snap_scaffold_14-snap.1957-T1
Valid prediction for GlimmerHMM_glimmerT_34465-T1
Valid prediction for GlimmerHMM_glimmerT_34462-T1
Couldn't classify 39810, 40475
Sorry, prediction pasa_asmbl_12283.p1 fails validation.
(AAT)	 TG	39810-40475	AC	AAA
Valid prediction for snap_scaffold_14-snap.1946-T1
Valid prediction for GlimmerHMM_glimmerT_34469-T1
Valid prediction for snap_scaffold_14-snap.1953-T1
Valid prediction for GlimmerHMM_glimmerT_34452-T1
Valid prediction for GlimmerHMM_glimmerT_34464-T1
Valid prediction for Augustus_model.g23024.t1
Valid prediction for snap_scaffold_14-snap.1956-T1
Valid prediction for GlimmerHMM_glimmerT_34443-T1
Valid prediction for Augustus_model.g23019.t1
Valid prediction for snap_scaffold_14-snap.1962-T1
Valid prediction for snap_scaffold_14-snap.1942-T1
Valid prediction for GlimmerHMM_glimmerT_34446-T1
Valid prediction for GlimmerHMM_glimmerT_34451-T1
Couldn't classify 169443, 169551
Couldn't classify 171142, 171174
Sorry, prediction pasa_asmbl_12290.p1 fails validation.
(CAG)	 TG	169443-169551	GT	AGG
(GTC)	 AG	169688-169812	GT	AGG
(GTA)	 AG	170098-170241	GT	ACG
(ACG)	 AG	170815-170856	GT	AGG
(CGT)	 AG	171142-171174	TG	CCT
-recovered pasa_asmbl_12290.p1, internal, 169688, 169812
-recovered pasa_asmbl_12290.p1, internal, 170098, 170241
-recovered pasa_asmbl_12290.p1, internal, 170815, 170856
Valid prediction for snap_scaffold_14-snap.1939-T1
Valid prediction for snap_scaffold_14-snap.1972-T1
Valid prediction for snap_scaffold_14-snap.1959-T1
Valid prediction for Augustus_model.g23012.t1
Valid prediction for snap_scaffold_14-snap.1978-T1
Couldn't classify 173509, 174288
Couldn't classify 175644, 175805
Sorry, prediction pasa_asmbl_12291.p1 fails validation.
(CTC)	 CA	173509-174288	GT	GGG
(AAT)	 AG	175644-175805	CT	ACC
Valid prediction for GlimmerHMM_glimmerT_34467-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_34470-T1
Valid prediction for snap_scaffold_14-snap.1954-T1
Valid prediction for GlimmerHMM_glimmerT_34449-T1
Valid prediction for snap_scaffold_14-snap.1965-T1
Valid prediction for GlimmerHMM_glimmerT_34450-T1
Valid prediction for snap_scaffold_14-snap.1940-T1
Valid prediction for snap_scaffold_14-snap.1958-T1
Valid prediction for snap_scaffold_14-snap.1973-T1
Valid prediction for snap_scaffold_14-snap.1961-T1
Valid prediction for CodingQuarry_transcript_15793-T1
Valid prediction for pasa_asmbl_13383.p1
Valid prediction for snap_scaffold_14-snap.1944-T1
Valid prediction for snap_scaffold_14-snap.1971-T1
Valid prediction for snap_scaffold_14-snap.1969-T1
Valid prediction for GlimmerHMM_glimmerT_34468-T1
Valid prediction for snap_scaffold_14-snap.1966-T1
Valid prediction for GlimmerHMM_glimmerT_34461-T1
Valid prediction for snap_scaffold_14-snap.1979-T1
Valid prediction for HiQ_model.g23025.t1
Valid prediction for snap_scaffold_14-snap.1975-T1
Valid prediction for snap_scaffold_14-snap.1963-T1
Valid prediction for snap_scaffold_14-snap.1949-T1
Valid prediction for snap_scaffold_14-snap.1970-T1
Valid prediction for snap_scaffold_14-snap.1967-T1
Valid prediction for GlimmerHMM_glimmerT_34458-T1
Valid prediction for HiQ_model.g23017.t1
Valid prediction for snap_scaffold_14-snap.1974-T1
Valid prediction for GlimmerHMM_glimmerT_34454-T1
Valid prediction for pasa_asmbl_13388.p1
Valid prediction for GlimmerHMM_glimmerT_34460-T1
Couldn't classify 120701, 120777
Sorry, prediction pasa_asmbl_13384.p1 fails validation.
(GTG)	 AG	120701-120777	GT	TGG
(GTT)	 AG	121150-121270	GT	GGG
(GAG)	 AG	121492-121605	GC	AGG
(GGC)	 AG	123347-123500	GT	AGG
(AGT)	 AG	125774-125910	GT	AAG
(GTG)	 AG	126045-126116	CC	GAC
-recovered pasa_asmbl_13384.p1, terminal, 126045, 126116
-recovered pasa_asmbl_13384.p1, internal, 120701, 120777
-recovered pasa_asmbl_13384.p1, internal, 121150, 121270
-recovered pasa_asmbl_13384.p1, internal, 121492, 121605
-recovered pasa_asmbl_13384.p1, internal, 123347, 123500
-recovered pasa_asmbl_13384.p1, internal, 125774, 125910
Valid prediction for HiQ_model.g23015.t1
Valid prediction for CodingQuarry_transcript_15795-T1
Valid prediction for Augustus_model.g23020.t1
Valid prediction for snap_scaffold_14-snap.1976-T1
Valid prediction for GlimmerHMM_glimmerT_34466-T1
Valid prediction for Augustus_model.g23018.t1
Valid prediction for CodingQuarry_transcript_15796-T1
Valid prediction for GlimmerHMM_glimmerT_34463-T1
Valid prediction for snap_scaffold_14-snap.1943-T1
Valid prediction for GlimmerHMM_glimmerT_34447-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 36946, rend_intergenic: 32044  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40283, rend_intergenic: 37921  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96021, rend_intergenic: 90788  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114523, rend_intergenic: 113204  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118999, rend_intergenic: 115054  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126770, rend_intergenic: 119157  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128567, rend_intergenic: 127609  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133485, rend_intergenic: 128961  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138738, rend_intergenic: 133570  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147815, rend_intergenic: 139374  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 150962, rend_intergenic: 148169  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 179697, rend_intergenic: 151114  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 191757, rend_intergenic: 182016  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 202148, rend_intergenic: 194472  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 216174
-exon list size: 333


building trellis

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97.3    
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98.2    
98.5    
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99.1    
99.4    
99.7    
-found 29 predictions from path traversal
Error with prediction: snap lend_intergenic: 36946, rend_intergenic: 32044  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40283, rend_intergenic: 37921  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96021, rend_intergenic: 90788  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114523, rend_intergenic: 113204  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118999, rend_intergenic: 115054  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126770, rend_intergenic: 119157  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128567, rend_intergenic: 127609  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133485, rend_intergenic: 128961  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138738, rend_intergenic: 133570  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147815, rend_intergenic: 139374  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 150962, rend_intergenic: 148169  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 179697, rend_intergenic: 151114  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 191757, rend_intergenic: 182016  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 202148, rend_intergenic: 194472  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 18 predictions persist after filtering for low support