-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_14/scaffold_14_8521408-8701165

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_34342-T1
Valid prediction for CodingQuarry_transcript_15768-T1
Valid prediction for snap_scaffold_14-snap.1782-T1
Valid prediction for snap_scaffold_14-snap.1770-T1
Valid prediction for pasa_asmbl_12255.p1
Valid prediction for GlimmerHMM_glimmerT_34343-T1
Couldn't classify 169983, 170109
Sorry, prediction pasa_asmbl_12263.p1 fails validation.
(GGA)	 TG	169983-170109	GT	TCG
(TTG)	 AG	170254-170312	GT	AGG
(AAA)	 AG	170401-170457	GT	AGG
(GGT)	 AG	170604-170669	GT	TTG
(AGA)	 AG	170755-170823	GT	ATG
(GCA)	 AG	171037-171126	GT	GGG
(GCC)	 AG	171234-171350	GT	AGG
(AAT)	 AG	171481-171510	GT	ATG
(ACC)	 AG	171592-171629	GT	CTG
(AGG)	 AG	171757-171836	GT	AGG
(AAA)	 AG	172009-172154	TC	AGT
-recovered pasa_asmbl_12263.p1, terminal, 172009, 172154
-recovered pasa_asmbl_12263.p1, internal, 170254, 170312
-recovered pasa_asmbl_12263.p1, internal, 170401, 170457
-recovered pasa_asmbl_12263.p1, internal, 170604, 170669
-recovered pasa_asmbl_12263.p1, internal, 170755, 170823
-recovered pasa_asmbl_12263.p1, internal, 171037, 171126
-recovered pasa_asmbl_12263.p1, internal, 171234, 171350
-recovered pasa_asmbl_12263.p1, internal, 171481, 171510
-recovered pasa_asmbl_12263.p1, internal, 171592, 171629
-recovered pasa_asmbl_12263.p1, internal, 171757, 171836
Valid prediction for snap_scaffold_14-snap.1778-T1
Valid prediction for CodingQuarry_transcript_15767-T1
Valid prediction for snap_scaffold_14-snap.1785-T1
Valid prediction for Augustus_model.g22959.t1
Valid prediction for snap_scaffold_14-snap.1767-T1
Valid prediction for HiQ_model.g22961.t1
Valid prediction for GlimmerHMM_glimmerT_34365-T1
Valid prediction for snap_scaffold_14-snap.1773-T1
Valid prediction for snap_scaffold_14-snap.1790-T1
Valid prediction for snap_scaffold_14-snap.1762-T1
Couldn't classify 123815, 124369
Sorry, prediction pasa_asmbl_12259.p1 fails validation.
(CGG)	 GA	123815-124369	TA	GAT
Valid prediction for snap_scaffold_14-snap.1774-T1
Valid prediction for GlimmerHMM_glimmerT_34351-T1
Valid prediction for GlimmerHMM_glimmerT_34348-T1
Valid prediction for snap_scaffold_14-snap.1757-T1
Valid prediction for snap_scaffold_14-snap.1781-T1
Valid prediction for CodingQuarry_transcript_15777-T1
Couldn't classify 126245, 126394
Sorry, prediction pasa_asmbl_12258.p1 fails validation.
(ATG)	 GA	122897-123529	GT	AGG
(GTG)	 AG	126245-126394	GA	ATG
-recovered pasa_asmbl_12258.p1, initial, 122897, 123529
Valid prediction for snap_scaffold_14-snap.1788-T1
Valid prediction for Augustus_model.g22947.t1
Valid prediction for Augustus_model.g22955.t1
Valid prediction for GlimmerHMM_glimmerT_34353-T1
Valid prediction for Augustus_model.g22952.t1
Valid prediction for GlimmerHMM_glimmerT_34349-T1
Valid prediction for GlimmerHMM_glimmerT_34346-T1
Valid prediction for HiQ_model.g22948.t1
Valid prediction for snap_scaffold_14-snap.1761-T1
Valid prediction for Augustus_model.g22956.t1
Valid prediction for GlimmerHMM_glimmerT_34362-T1
Valid prediction for snap_scaffold_14-snap.1765-T1
Valid prediction for GlimmerHMM_glimmerT_34355-T1
Valid prediction for Augustus_model.g22953.t1
Valid prediction for HiQ_model.g22951.t1
Couldn't classify 127402, 128022
Sorry, prediction pasa_asmbl_12261.p1 fails validation.
(ATG)	 TG	127402-128022	CA	GGC
Valid prediction for snap_scaffold_14-snap.1772-T1
Couldn't classify 122897, 123811
Sorry, prediction pasa_asmbl_12257.p1 fails validation.
(ATG)	 GA	122897-123811	AG	GGA
Valid prediction for Augustus_model.g22943.t1
Valid prediction for GlimmerHMM_glimmerT_34356-T1
Valid prediction for snap_scaffold_14-snap.1760-T1
Valid prediction for Augustus_model.g22946.t1
Valid prediction for snap_scaffold_14-snap.1780-T1
Couldn't classify 6148, 6334
Sorry, prediction pasa_asmbl_12249.p1 fails validation.
(TTC)	 TG	6148-6334	GT	AGG
(GTA)	 AG	7065-7218	GT	AGG
(TAT)	 AG	7431-7614	GT	AGG
(ACA)	 AG	7803-7915	GT	AGG
(GTG)	 AG	8055-8235	CT	GAC
-recovered pasa_asmbl_12249.p1, terminal, 8055, 8235
-recovered pasa_asmbl_12249.p1, internal, 7065, 7218
-recovered pasa_asmbl_12249.p1, internal, 7431, 7614
-recovered pasa_asmbl_12249.p1, internal, 7803, 7915
Valid prediction for GlimmerHMM_glimmerT_34347-T1
Valid prediction for Augustus_model.g22944.t1
Valid prediction for snap_scaffold_14-snap.1763-T1
Valid prediction for CodingQuarry_transcript_15773-T1
Valid prediction for Augustus_model.g22941.t1
Valid prediction for Augustus_model.g22942.t1
Valid prediction for snap_scaffold_14-snap.1792-T1
Valid prediction for pasa_asmbl_12256.p1
Valid prediction for GlimmerHMM_glimmerT_34357-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for CodingQuarry_transcript_15772-T1
Valid prediction for GlimmerHMM_glimmerT_34363-T1
Valid prediction for snap_scaffold_14-snap.1768-T1
Valid prediction for snap_scaffold_14-snap.1769-T1
Valid prediction for snap_scaffold_14-snap.1791-T1
Valid prediction for HiQ_model.g22957.t1
Valid prediction for HiQ_model.g22958.t1
Valid prediction for snap_scaffold_14-snap.1787-T1
Valid prediction for snap_scaffold_14-snap.1766-T1
Valid prediction for snap_scaffold_14-snap.1777-T1
Valid prediction for HiQ_model.g22962.t1
Valid prediction for snap_scaffold_14-snap.1775-T1
Valid prediction for HiQ_model.g22949.t1
Valid prediction for snap_scaffold_14-snap.1779-T1
Valid prediction for GlimmerHMM_glimmerT_34350-T1
Valid prediction for GlimmerHMM_glimmerT_34364-T1
Valid prediction for GlimmerHMM_glimmerT_34359-T1
Valid prediction for snap_scaffold_14-snap.1789-T1
Couldn't classify 32515, 32743
Couldn't classify 36048, 36098
Sorry, prediction pasa_asmbl_13336.p1 fails validation.
(GGT)	 AC	32515-32743	GT	ACG
(CCT)	 AG	35450-35802	GT	CGG
(ATA)	 AG	36048-36098	GG	ATG
-recovered pasa_asmbl_13336.p1, internal, 35450, 35802
Valid prediction for snap_scaffold_14-snap.1786-T1
Valid prediction for snap_scaffold_14-snap.1759-T1
Valid prediction for GlimmerHMM_glimmerT_34344-T1
Valid prediction for CodingQuarry_transcript_15779-T1
Valid prediction for CodingQuarry_transcript_15778-T1
Valid prediction for snap_scaffold_14-snap.1758-T1
Valid prediction for pasa_asmbl_13337.p1
Valid prediction for Augustus_model.g22954.t1
Valid prediction for GlimmerHMM_glimmerT_34360-T1
Valid prediction for Augustus_model.g22960.t1
Valid prediction for GlimmerHMM_glimmerT_34358-T1
Valid prediction for CodingQuarry_transcript_15774-T1
Valid prediction for snap_scaffold_14-snap.1771-T1
Couldn't classify 36228, 36301
Sorry, prediction pasa_asmbl_13335.p1 fails validation.
(GTC)	 TA	36228-36301	GT	AGG
(CCT)	 AG	36745-36921	GT	AGG
(CTT)	 AG	37209-37332	GT	AGG
(AAA)	 AG	38434-38559	GT	AGG
(GGT)	 AG	38661-38720	AG	GAA
-recovered pasa_asmbl_13335.p1, terminal, 38661, 38720
-recovered pasa_asmbl_13335.p1, internal, 36745, 36921
-recovered pasa_asmbl_13335.p1, internal, 37209, 37332
-recovered pasa_asmbl_13335.p1, internal, 38434, 38559
Valid prediction for GlimmerHMM_glimmerT_34354-T1
Valid prediction for CodingQuarry_transcript_15771-T1
Valid prediction for snap_scaffold_14-snap.1756-T1
Valid prediction for Augustus_model.g22945.t1
Valid prediction for pasa_asmbl_13329.p1
Valid prediction for snap_scaffold_14-snap.1776-T1
Valid prediction for pasa_asmbl_13334.p1
Valid prediction for snap_scaffold_14-snap.1783-T1
Valid prediction for HiQ_model.g22950.t1
Valid prediction for snap_scaffold_14-snap.1764-T1
Valid prediction for GlimmerHMM_glimmerT_34361-T1
Valid prediction for GlimmerHMM_glimmerT_34352-T1
Valid prediction for snap_scaffold_14-snap.1784-T1
Valid prediction for CodingQuarry_transcript_15776-T1
Valid prediction for GlimmerHMM_glimmerT_34345-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 31923, rend_intergenic: 10854  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39543, rend_intergenic: 32459  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59905, rend_intergenic: 46525  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69837, rend_intergenic: 62577  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86593, rend_intergenic: 81578  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109475, rend_intergenic: 98621  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111372, rend_intergenic: 109948  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116373, rend_intergenic: 112139  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146022, rend_intergenic: 141451  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 167138, rend_intergenic: 161157  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 177175, rend_intergenic: 173328  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 179758
-exon list size: 359


building trellis

0.3    
0.6    
0.8    
1.1    
1.4    
1.7    
1.9    
2.2    
2.5    
2.8    
3.0    
3.3    
3.6    
3.9    
4.2    
4.4    
4.7    
5.0    
5.3    
5.5    
5.8    
6.1    
6.4    
6.6    
6.9    
7.2    
7.5    
7.8    
8.0    
8.3    
8.6    
8.9    
9.1    
9.4    
9.7    
10.0    
10.2    
10.5    
10.8    
11.1    
11.4    
11.6    
11.9    
12.2    
12.5    
12.7    
13.0    
13.3    
13.6    
13.9    
14.1    
14.4    
14.7    
15.0    
15.2    
15.5    
15.8    
16.1    
16.3    
16.6    
16.9    
17.2    
17.5    
17.7    
18.0    
18.3    
18.6    
18.8    
19.1    
19.4    
19.7    
19.9    
20.2    
20.5    
20.8    
21.1    
21.3    
21.6    
21.9    
22.2    
22.4    
22.7    
23.0    
23.3    
23.5    
23.8    
24.1    
24.4    
24.7    
24.9    
25.2    
25.5    
25.8    
26.0    
26.3    
26.6    
26.9    
27.1    
27.4    
27.7    
28.0    
28.3    
28.5    
28.8    
29.1    
29.4    
29.6    
29.9    
30.2    
30.5    
30.7    
31.0    
31.3    
31.6    
31.9    
32.1    
32.4    
32.7    
33.0    
33.2    
33.5    
33.8    
34.1    
34.3    
34.6    
34.9    
35.2    
35.5    
35.7    
36.0    
36.3    
36.6    
36.8    
37.1    
37.4    
37.7    
38.0    
38.2    
38.5    
38.8    
39.1    
39.3    
39.6    
39.9    
40.2    
40.4    
40.7    
41.0    
41.3    
41.6    
41.8    
42.1    
42.4    
42.7    
42.9    
43.2    
43.5    
43.8    
44.0    
44.3    
44.6    
44.9    
45.2    
45.4    
45.7    
46.0    
46.3    
46.5    
46.8    
47.1    
47.4    
47.6    
47.9    
48.2    
48.5    
48.8    
49.0    
49.3    
49.6    
49.9    
50.1    
50.4    
50.7    
51.0    
51.2    
51.5    
51.8    
52.1    
52.4    
52.6    
52.9    
53.2    
53.5    
53.7    
54.0    
54.3    
54.6    
54.8    
55.1    
55.4    
55.7    
56.0    
56.2    
56.5    
56.8    
57.1    
57.3    
57.6    
57.9    
58.2    
58.4    
58.7    
59.0    
59.3    
59.6    
59.8    
60.1    
60.4    
60.7    
60.9    
61.2    
61.5    
61.8    
62.0    
62.3    
62.6    
62.9    
63.2    
63.4    
63.7    
64.0    
64.3    
64.5    
64.8    
65.1    
65.4    
65.7    
65.9    
66.2    
66.5    
66.8    
67.0    
67.3    
67.6    
67.9    
68.1    
68.4    
68.7    
69.0    
69.3    
69.5    
69.8    
70.1    
70.4    
70.6    
70.9    
71.2    
71.5    
71.7    
72.0    
72.3    
72.6    
72.9    
73.1    
73.4    
73.7    
74.0    
74.2    
74.5    
74.8    
75.1    
75.3    
75.6    
75.9    
76.2    
76.5    
76.7    
77.0    
77.3    
77.6    
77.8    
78.1    
78.4    
78.7    
78.9    
79.2    
79.5    
79.8    
80.1    
80.3    
80.6    
80.9    
81.2    
81.4    
81.7    
82.0    
82.3    
82.5    
82.8    
83.1    
83.4    
83.7    
83.9    
84.2    
84.5    
84.8    
85.0    
85.3    
85.6    
85.9    
86.1    
86.4    
86.7    
87.0    
87.3    
87.5    
87.8    
88.1    
88.4    
88.6    
88.9    
89.2    
89.5    
89.8    
90.0    
90.3    
90.6    
90.9    
91.1    
91.4    
91.7    
92.0    
92.2    
92.5    
92.8    
93.1    
93.4    
93.6    
93.9    
94.2    
94.5    
94.7    
95.0    
95.3    
95.6    
95.8    
96.1    
96.4    
96.7    
97.0    
97.2    
97.5    
97.8    
98.1    
98.3    
98.6    
98.9    
99.2    
99.4    
99.7    
-found 28 predictions from path traversal
Error with prediction: snap lend_intergenic: 31923, rend_intergenic: 10854  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39543, rend_intergenic: 32459  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59905, rend_intergenic: 46525  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69837, rend_intergenic: 62577  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86593, rend_intergenic: 81578  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109475, rend_intergenic: 98621  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111372, rend_intergenic: 109948  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116373, rend_intergenic: 112139  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146022, rend_intergenic: 141451  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 167138, rend_intergenic: 161157  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 177175, rend_intergenic: 173328  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 22 predictions persist after filtering for low support