-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_14/scaffold_14_8308120-8524003

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_14-snap.1752-T1
Couldn't classify 70691, 71191
Couldn't classify 72406, 72492
Sorry, prediction pasa_asmbl_12231.p1 fails validation.
(GGA)	 GA	70691-71191	GT	AGG
(ATG)	 AG	72406-72492	GC	GGG
-recovered pasa_asmbl_12231.p1, initial, 72406, 72492
-recovered pasa_asmbl_12231.p1, internal, 72406, 72492
Couldn't classify 84962, 85696
Sorry, prediction pasa_asmbl_12722.p1 fails validation.
(ATG)	 AC	84962-85696	CT	ACC
Couldn't classify 77005, 77040
Couldn't classify 77340, 77621
Sorry, prediction pasa_asmbl_12232.p1 fails validation.
(TCC)	 CC	77005-77040	GT	CGG
(CTA)	 AG	77340-77621	GG	AAG
Valid prediction for snap_scaffold_14-snap.1731-T1
Valid prediction for Augustus_model.g22940.t1
Valid prediction for Augustus_model.g22922.t1
Couldn't classify 84128, 84481
Sorry, prediction pasa_asmbl_12237.p3 fails validation.
(CAA)	 CG	84128-84481	CA	AAC
Valid prediction for snap_scaffold_14-snap.1736-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for snap_scaffold_14-snap.1715-T1
Valid prediction for CodingQuarry_transcript_15761-T1
Valid prediction for CodingQuarry_transcript_15751-T1
Valid prediction for GlimmerHMM_glimmerT_34316-T1
Couldn't classify 81693, 81707
Couldn't classify 83003, 83182
Sorry, prediction pasa_asmbl_12235.p1 fails validation.
(GTC)	 TT	81693-81707	GT	AGG
(GAC)	 AG	81956-82123	GT	ATG
(GCT)	 AG	82229-82390	GT	AGG
(GTG)	 AG	82549-82830	GT	AGG
(GAC)	 AG	83003-83182	TG	AGT
-recovered pasa_asmbl_12235.p1, internal, 81956, 82123
-recovered pasa_asmbl_12235.p1, internal, 82229, 82390
-recovered pasa_asmbl_12235.p1, internal, 82549, 82830
Valid prediction for Augustus_model.g22925.t1
Valid prediction for snap_scaffold_14-snap.1748-T1
Valid prediction for snap_scaffold_14-snap.1729-T1
Valid prediction for snap_scaffold_14-snap.1720-T1
Valid prediction for GlimmerHMM_glimmerT_34335-T1
Valid prediction for Augustus_model.g22923.t1
Valid prediction for snap_scaffold_14-snap.1738-T1
Valid prediction for snap_scaffold_14-snap.1746-T1
Valid prediction for snap_scaffold_14-snap.1735-T1
Valid prediction for snap_scaffold_14-snap.1740-T1
Valid prediction for HiQ_model.g22919.t1
Valid prediction for snap_scaffold_14-snap.1717-T1
Valid prediction for GlimmerHMM_glimmerT_34333-T1
Valid prediction for GlimmerHMM_glimmerT_34313-T1
Valid prediction for GlimmerHMM_glimmerT_34319-T1
Valid prediction for snap_scaffold_14-snap.1749-T1
Valid prediction for Augustus_model.g22938.t1
Valid prediction for GlimmerHMM_glimmerT_34338-T1
Valid prediction for pasa_asmbl_12243.p1
Valid prediction for HiQ_model.g22937.t1
Valid prediction for snap_scaffold_14-snap.1712-T1
Valid prediction for pasa_asmbl_12238.p1
Valid prediction for snap_scaffold_14-snap.1744-T1
Couldn't classify 190838, 190893
Sorry, prediction pasa_asmbl_12247.p1 fails validation.
(CTC)	 GA	190838-190893	GT	ATG
(GGC)	 AG	191293-191442	GT	AGG
(CTC)	 AG	191613-191783	GT	AAG
(GTC)	 AG	192157-192259	GT	AGG
(GAC)	 AG	192348-192501	GT	AGG
(GCC)	 AG	192732-192873	GT	AGG
(GTC)	 AG	193040-193145	CA	AAC
-recovered pasa_asmbl_12247.p1, terminal, 193040, 193145
-recovered pasa_asmbl_12247.p1, internal, 191293, 191442
-recovered pasa_asmbl_12247.p1, internal, 191613, 191783
-recovered pasa_asmbl_12247.p1, internal, 192157, 192259
-recovered pasa_asmbl_12247.p1, internal, 192348, 192501
-recovered pasa_asmbl_12247.p1, internal, 192732, 192873
Valid prediction for snap_scaffold_14-snap.1722-T1
Valid prediction for snap_scaffold_14-snap.1719-T1
Valid prediction for GlimmerHMM_glimmerT_34326-T1
Couldn't classify 190892, 190893
Sorry, prediction CodingQuarry_transcript_15765-T1 fails validation.
(ATG)	 AG	190892-190893	GT	ATG
(GGC)	 AG	191293-191442	GT	AGG
(CTC)	 AG	191613-191783	GT	AAG
(GTC)	 AG	192157-192259	GT	AGG
(GAC)	 AG	192348-192501	GT	AGG
(GCC)	 AG	192732-192873	GT	AGG
(GTC)	 AG	193040-193145	CA	AAC
-recovered CodingQuarry_transcript_15765-T1, terminal, 193040, 193145
-recovered CodingQuarry_transcript_15765-T1, internal, 190892, 190893
-recovered CodingQuarry_transcript_15765-T1, internal, 191293, 191442
-recovered CodingQuarry_transcript_15765-T1, internal, 191613, 191783
-recovered CodingQuarry_transcript_15765-T1, internal, 192157, 192259
-recovered CodingQuarry_transcript_15765-T1, internal, 192348, 192501
-recovered CodingQuarry_transcript_15765-T1, internal, 192732, 192873
Valid prediction for CodingQuarry_transcript_15762-T1
Valid prediction for HiQ_model.g22930.t1
Valid prediction for GlimmerHMM_glimmerT_34321-T1
Couldn't classify 77995, 78039
Couldn't classify 79779, 79818
Sorry, prediction pasa_asmbl_12233.p1 fails validation.
(TTA)	 CT	77995-78039	GT	CTG
(GAC)	 AG	78144-78383	GT	AGG
(TTG)	 AG	78797-78885	GT	AGG
(GTA)	 AG	79779-79818	GA	GGG
-recovered pasa_asmbl_12233.p1, internal, 78144, 78383
-recovered pasa_asmbl_12233.p1, internal, 78797, 78885
Valid prediction for Augustus_model.g22935.t1
Couldn't classify 81275, 81386
Sorry, prediction pasa_asmbl_12234.p1 fails validation.
(ATG)	 AA	80290-80336	GT	GGG
(GTT)	 AG	80476-80543	GT	ACG
(GGT)	 AG	80658-80808	GT	AGG
(GTT)	 AG	80944-81090	GT	AGG
(ACG)	 AG	81275-81386	GG	TGG
-recovered pasa_asmbl_12234.p1, initial, 80290, 80336
-recovered pasa_asmbl_12234.p1, internal, 80476, 80543
-recovered pasa_asmbl_12234.p1, internal, 80658, 80808
-recovered pasa_asmbl_12234.p1, internal, 80944, 81090
Valid prediction for snap_scaffold_14-snap.1724-T1
Couldn't classify 49696, 49789
Couldn't classify 50387, 50419
Sorry, prediction pasa_asmbl_12228.p1 fails validation.
(GCC)	 TA	49696-49789	GT	CGG
(TGA)	 AG	49906-50033	GT	AGG
(AGG)	 AG	50188-50247	GT	TGG
(AGA)	 AG	50387-50419	GC	GGG
-recovered pasa_asmbl_12228.p1, internal, 49906, 50033
-recovered pasa_asmbl_12228.p1, internal, 50188, 50247
-recovered pasa_asmbl_12228.p1, internal, 50387, 50419
Valid prediction for snap_scaffold_14-snap.1733-T1
Couldn't classify 52676, 52693
Sorry, prediction pasa_asmbl_12229.p1 fails validation.
(ATG)	 AC	51198-51329	GT	AGG
(GCC)	 AG	51434-51547	GT	AGG
(GAG)	 AG	51672-51771	GT	CGG
(GTA)	 AG	51948-52032	GT	AGG
(TGA)	 AG	52181-52400	GC	TGG
(ACC)	 AG	52493-52585	GT	AGG
(GTG)	 AG	52676-52693	GA	CGG
-recovered pasa_asmbl_12229.p1, initial, 51198, 51329
-recovered pasa_asmbl_12229.p1, internal, 51434, 51547
-recovered pasa_asmbl_12229.p1, internal, 51672, 51771
-recovered pasa_asmbl_12229.p1, internal, 51948, 52032
-recovered pasa_asmbl_12229.p1, internal, 52181, 52400
-recovered pasa_asmbl_12229.p1, internal, 52493, 52585
Valid prediction for pasa_asmbl_12224.p1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 66931, 66943
Couldn't classify 69836, 70297
Sorry, prediction pasa_asmbl_13319.p1 fails validation.
(CAC)	 TG	66931-66943	GT	GGG
(AGA)	 AG	67125-67277	GT	GGG
(ACT)	 AG	67743-67906	GT	AGG
(TTT)	 AG	68053-68181	GT	AGG
(TCC)	 AG	68336-68589	GT	AAG
(ACC)	 AG	68923-69091	GT	AGG
(GTG)	 AG	69282-69668	GT	TGG
(GTG)	 AG	69836-70297	CC	TGC
-recovered pasa_asmbl_13319.p1, internal, 67125, 67277
-recovered pasa_asmbl_13319.p1, internal, 67743, 67906
-recovered pasa_asmbl_13319.p1, internal, 68053, 68181
-recovered pasa_asmbl_13319.p1, internal, 68336, 68589
-recovered pasa_asmbl_13319.p1, internal, 68923, 69091
-recovered pasa_asmbl_13319.p1, internal, 69282, 69668
Valid prediction for HiQ_model.g22918.t1
Valid prediction for snap_scaffold_14-snap.1716-T1
Valid prediction for CodingQuarry_transcript_15759-T1
Valid prediction for snap_scaffold_14-snap.1725-T1
Valid prediction for GlimmerHMM_glimmerT_34318-T1
Couldn't classify 70376, 70822
Sorry, prediction pasa_asmbl_13318.p1 fails validation.
(GAA)	 TG	70376-70822	AC	AGA
Valid prediction for snap_scaffold_14-snap.1710-T1
Valid prediction for snap_scaffold_14-snap.1734-T1
Valid prediction for pasa_asmbl_13307.p1
Valid prediction for snap_scaffold_14-snap.1732-T1
Valid prediction for GlimmerHMM_glimmerT_34337-T1
Valid prediction for snap_scaffold_14-snap.1743-T1
Valid prediction for snap_scaffold_14-snap.1718-T1
Valid prediction for CodingQuarry_transcript_15755-T1
Valid prediction for snap_scaffold_14-snap.1739-T1
Valid prediction for CodingQuarry_transcript_15760-T1
Couldn't classify 73302, 73421
Couldn't classify 73450, 73599
Sorry, prediction CodingQuarry_transcript_15763-T1 fails validation.
(ATG)	 CT	73302-73421	AG	GCA
(TGT)	 GC	73450-73599	TT	AGT
Valid prediction for CodingQuarry_transcript_15753-T1
Valid prediction for GlimmerHMM_glimmerT_34331-T1
Couldn't classify 66868, 66942
Sorry, prediction pasa_asmbl_13320.p1 fails validation.
(ATG)	 CA	61226-61349	GT	AGG
(TCC)	 AG	64120-64185	GT	ACG
(CGC)	 AG	66642-66697	GT	GGG
(ACT)	 AG	66868-66942	GG	AGG
-recovered pasa_asmbl_13320.p1, initial, 61226, 61349
-recovered pasa_asmbl_13320.p1, internal, 64120, 64185
-recovered pasa_asmbl_13320.p1, internal, 66642, 66697
Couldn't classify 70796, 70978
Couldn't classify 72586, 72665
Sorry, prediction pasa_asmbl_13316.p1 fails validation.
(ATC)	 AG	70796-70978	GT	AGG
(GTC)	 AG	71116-71310	GT	AGG
(AGA)	 AG	71519-71626	GT	AGG
(GGG)	 AG	71746-71883	GT	AGG
(GGG)	 AG	71994-72086	GT	AAG
(GAG)	 AG	72422-72482	GT	AGG
(AAA)	 AG	72586-72665	TC	CAT
-recovered pasa_asmbl_13316.p1, internal, 70796, 70978
-recovered pasa_asmbl_13316.p1, internal, 71116, 71310
-recovered pasa_asmbl_13316.p1, internal, 71519, 71626
-recovered pasa_asmbl_13316.p1, internal, 71746, 71883
-recovered pasa_asmbl_13316.p1, internal, 71994, 72086
-recovered pasa_asmbl_13316.p1, internal, 72422, 72482
Valid prediction for Augustus_model.g22916.t1
Valid prediction for pasa_asmbl_13313.p1
Valid prediction for CodingQuarry_transcript_15756-T1
Valid prediction for snap_scaffold_14-snap.1714-T1
Valid prediction for CodingQuarry_transcript_15757-T1
Valid prediction for GlimmerHMM_glimmerT_34332-T1
Valid prediction for GlimmerHMM_glimmerT_34329-T1
Couldn't classify 149742, 150041
Couldn't classify 151100, 151140
Sorry, prediction pasa_asmbl_13300.p1 fails validation.
(GAC)	 AG	149742-150041	GT	TGG
(CTT)	 AG	150206-150341	GT	AGG
(CGG)	 AG	150514-150647	GT	AGG
(GGA)	 AG	150911-151004	GT	TGG
(GTT)	 AG	151100-151140	GC	CAG
-recovered pasa_asmbl_13300.p1, internal, 149742, 150041
-recovered pasa_asmbl_13300.p1, internal, 150206, 150341
-recovered pasa_asmbl_13300.p1, internal, 150514, 150647
-recovered pasa_asmbl_13300.p1, internal, 150911, 151004
-recovered pasa_asmbl_13300.p1, internal, 151100, 151140
Valid prediction for HiQ_model.g22933.t1
Valid prediction for Augustus_model.g22921.t1
Valid prediction for GlimmerHMM_glimmerT_34324-T1
Valid prediction for snap_scaffold_14-snap.1747-T1
Valid prediction for GlimmerHMM_glimmerT_34340-T1
Valid prediction for CodingQuarry_transcript_15766-T1
Valid prediction for GlimmerHMM_glimmerT_34328-T1
Valid prediction for Augustus_model.g22932.t1
Couldn't classify 173117, 173316
Sorry, prediction pasa_asmbl_13292.p1 fails validation.
(GGG)	 GA	173117-173316	GT	AGG
(CTG)	 AG	173464-173569	GT	ACG
(ATG)	 AG	173682-173790	GT	CTG
(TGA)	 AG	173929-174062	GT	TGG
(GGT)	 AG	174203-174238	TG	AAT
-recovered pasa_asmbl_13292.p1, initial, 173682, 173790
-recovered pasa_asmbl_13292.p1, terminal, 174203, 174238
-recovered pasa_asmbl_13292.p1, internal, 173464, 173569
-recovered pasa_asmbl_13292.p1, internal, 173682, 173790
-recovered pasa_asmbl_13292.p1, internal, 173929, 174062
Valid prediction for HiQ_model.g22926.t1
Valid prediction for CodingQuarry_transcript_15752-T1
Valid prediction for snap_scaffold_14-snap.1730-T1
Valid prediction for GlimmerHMM_glimmerT_34311-T1
Valid prediction for snap_scaffold_14-snap.1753-T1
Valid prediction for HiQ_model.g22929.t1
Valid prediction for HiQ_model.g22920.t1
Valid prediction for GlimmerHMM_glimmerT_34314-T1
Valid prediction for Augustus_model.g22939.t1
Valid prediction for GlimmerHMM_glimmerT_34322-T1
Valid prediction for GlimmerHMM_glimmerT_34336-T1
Valid prediction for snap_scaffold_14-snap.1755-T1
Valid prediction for GlimmerHMM_glimmerT_34323-T1
Valid prediction for Augustus_model.g22917.t1
Couldn't classify 168919, 168945
Couldn't classify 169759, 169991
Sorry, prediction pasa_asmbl_13295.p1 fails validation.
(ACA)	 GC	168919-168945	GT	AAG
(GAC)	 AG	169045-169125	GT	AGG
(GTG)	 AG	169356-169415	GT	AAG
(ACG)	 AG	169607-169646	GT	AGG
(CTG)	 AG	169759-169991	AA	AGA
-recovered pasa_asmbl_13295.p1, internal, 169045, 169125
-recovered pasa_asmbl_13295.p1, internal, 169356, 169415
-recovered pasa_asmbl_13295.p1, internal, 169607, 169646
Valid prediction for snap_scaffold_14-snap.1741-T1
Valid prediction for snap_scaffold_14-snap.1750-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for pasa_asmbl_13301.p1
Couldn't classify 72669, 73106
Sorry, prediction pasa_asmbl_13314.p1 fails validation.
(CCC)	 CT	72669-73106	CC	AGC
Valid prediction for snap_scaffold_14-snap.1726-T1
Valid prediction for Augustus_model.g22928.t1
Valid prediction for snap_scaffold_14-snap.1742-T1
Valid prediction for snap_scaffold_14-snap.1721-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for CodingQuarry_transcript_15758-T1
Valid prediction for snap_scaffold_14-snap.1709-T1
Valid prediction for snap_scaffold_14-snap.1727-T1
Valid prediction for GlimmerHMM_glimmerT_34312-T1
Valid prediction for pasa_asmbl_13288.p1
Valid prediction for GlimmerHMM_glimmerT_34339-T1
Valid prediction for snap_scaffold_14-snap.1745-T1
Valid prediction for snap_scaffold_14-snap.1728-T1
Valid prediction for Augustus_model.g22927.t1
Valid prediction for GlimmerHMM_glimmerT_34327-T1
Valid prediction for Augustus_model.g22934.t1
Valid prediction for snap_scaffold_14-snap.1737-T1
Valid prediction for GlimmerHMM_glimmerT_34315-T1
Valid prediction for snap_scaffold_14-snap.1723-T1
Valid prediction for GlimmerHMM_glimmerT_34320-T1
Valid prediction for GlimmerHMM_glimmerT_34334-T1
Valid prediction for Augustus_model.g22931.t1
Valid prediction for Augustus_model.g22924.t1
Couldn't classify 170820, 170831
Couldn't classify 172861, 172895
Sorry, prediction pasa_asmbl_13294.p1 fails validation.
(TCC)	 AC	170820-170831	GT	CAG
(AAT)	 AG	171099-171198	GT	AGG
(GTC)	 AG	171401-171562	GT	AGG
(AGG)	 AG	171741-171946	GT	AGG
(GAA)	 AG	172098-172198	GT	AAG
(GTG)	 AG	172540-172721	GT	GGG
(GTA)	 AG	172861-172895	AG	AGA
-recovered pasa_asmbl_13294.p1, terminal, 171099, 171198
-recovered pasa_asmbl_13294.p1, internal, 171099, 171198
-recovered pasa_asmbl_13294.p1, internal, 171401, 171562
-recovered pasa_asmbl_13294.p1, internal, 171741, 171946
-recovered pasa_asmbl_13294.p1, internal, 172098, 172198
-recovered pasa_asmbl_13294.p1, internal, 172540, 172721
Valid prediction for Augustus_model.g22936.t1
Valid prediction for snap_scaffold_14-snap.1711-T1
Couldn't classify 73302, 73449
Couldn't classify 73484, 73599
Sorry, prediction CodingQuarry_transcript_15764-T1 fails validation.
(ATG)	 CT	73302-73449	TG	GCT
(GCC)	 GC	73484-73599	TT	AGT
Valid prediction for pasa_asmbl_13298.p1
Valid prediction for GlimmerHMM_glimmerT_34325-T1
Valid prediction for snap_scaffold_14-snap.1751-T1
Valid prediction for GlimmerHMM_glimmerT_34317-T1
Valid prediction for GlimmerHMM_glimmerT_34330-T1
Valid prediction for snap_scaffold_14-snap.1713-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: GlimmerHMM lend_intergenic: 15220, rend_intergenic: 15217  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17187, rend_intergenic: 15217  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43425, rend_intergenic: 41269  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86461, rend_intergenic: 72739  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92869, rend_intergenic: 90429  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123183, rend_intergenic: 113984  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128228, rend_intergenic: 126458  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130295, rend_intergenic: 128880  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141652, rend_intergenic: 130366  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146070, rend_intergenic: 142286  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 150105, rend_intergenic: 149999  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153076, rend_intergenic: 150113  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 154659, rend_intergenic: 153182  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165384, rend_intergenic: 154744  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171215, rend_intergenic: 169352  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 172024, rend_intergenic: 171450  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 174340, rend_intergenic: 172044  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 201750, rend_intergenic: 196011  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 206812, rend_intergenic: 201983  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 208423, rend_intergenic: 208303  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 215884
-exon list size: 516


building trellis

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9.1    
9.3    
9.5    
9.7    
9.8    
10.0    
10.2    
10.4    
10.6    
10.8    
11.0    
11.2    
11.4    
11.6    
11.8    
12.0    
12.2    
12.4    
12.5    
12.7    
12.9    
13.1    
13.3    
13.5    
13.7    
13.9    
14.1    
14.3    
14.5    
14.7    
14.9    
15.1    
15.3    
15.4    
15.6    
15.8    
16.0    
16.2    
16.4    
16.6    
16.8    
17.0    
17.2    
17.4    
17.6    
17.8    
18.0    
18.1    
18.3    
18.5    
18.7    
18.9    
19.1    
19.3    
19.5    
19.7    
19.9    
20.1    
20.3    
20.5    
20.7    
20.8    
21.0    
21.2    
21.4    
21.6    
21.8    
22.0    
22.2    
22.4    
22.6    
22.8    
23.0    
23.2    
23.4    
23.6    
23.7    
23.9    
24.1    
24.3    
24.5    
24.7    
24.9    
25.1    
25.3    
25.5    
25.7    
25.9    
26.1    
26.3    
26.4    
26.6    
26.8    
27.0    
27.2    
27.4    
27.6    
27.8    
28.0    
28.2    
28.4    
28.6    
28.8    
29.0    
29.2    
29.3    
29.5    
29.7    
29.9    
30.1    
30.3    
30.5    
30.7    
30.9    
31.1    
31.3    
31.5    
31.7    
31.9    
32.0    
32.2    
32.4    
32.6    
32.8    
33.0    
33.2    
33.4    
33.6    
33.8    
34.0    
34.2    
34.4    
34.6    
34.7    
34.9    
35.1    
35.3    
35.5    
35.7    
35.9    
36.1    
36.3    
36.5    
36.7    
36.9    
37.1    
37.3    
37.5    
37.6    
37.8    
38.0    
38.2    
38.4    
38.6    
38.8    
39.0    
39.2    
39.4    
39.6    
39.8    
40.0    
40.2    
40.3    
40.5    
40.7    
40.9    
41.1    
41.3    
41.5    
41.7    
41.9    
42.1    
42.3    
42.5    
42.7    
42.9    
43.1    
43.2    
43.4    
43.6    
43.8    
44.0    
44.2    
44.4    
44.6    
44.8    
45.0    
45.2    
45.4    
45.6    
45.8    
45.9    
46.1    
46.3    
46.5    
46.7    
46.9    
47.1    
47.3    
47.5    
47.7    
47.9    
48.1    
48.3    
48.5    
48.6    
48.8    
49.0    
49.2    
49.4    
49.6    
49.8    
50.0    
50.2    
50.4    
50.6    
50.8    
51.0    
51.2    
51.4    
51.5    
51.7    
51.9    
52.1    
52.3    
52.5    
52.7    
52.9    
53.1    
53.3    
53.5    
53.7    
53.9    
54.1    
54.2    
54.4    
54.6    
54.8    
55.0    
55.2    
55.4    
55.6    
55.8    
56.0    
56.2    
56.4    
56.6    
56.8    
56.9    
57.1    
57.3    
57.5    
57.7    
57.9    
58.1    
58.3    
58.5    
58.7    
58.9    
59.1    
59.3    
59.5    
59.7    
59.8    
60.0    
60.2    
60.4    
60.6    
60.8    
61.0    
61.2    
61.4    
61.6    
61.8    
62.0    
62.2    
62.4    
62.5    
62.7    
62.9    
63.1    
63.3    
63.5    
63.7    
63.9    
64.1    
64.3    
64.5    
64.7    
64.9    
65.1    
65.3    
65.4    
65.6    
65.8    
66.0    
66.2    
66.4    
66.6    
66.8    
67.0    
67.2    
67.4    
67.6    
67.8    
68.0    
68.1    
68.3    
68.5    
68.7    
68.9    
69.1    
69.3    
69.5    
69.7    
69.9    
70.1    
70.3    
70.5    
70.7    
70.8    
71.0    
71.2    
71.4    
71.6    
71.8    
72.0    
72.2    
72.4    
72.6    
72.8    
73.0    
73.2    
73.4    
73.6    
73.7    
73.9    
74.1    
74.3    
74.5    
74.7    
74.9    
75.1    
75.3    
75.5    
75.7    
75.9    
76.1    
76.3    
76.4    
76.6    
76.8    
77.0    
77.2    
77.4    
77.6    
77.8    
78.0    
78.2    
78.4    
78.6    
78.8    
79.0    
79.2    
79.3    
79.5    
79.7    
79.9    
80.1    
80.3    
80.5    
80.7    
80.9    
81.1    
81.3    
81.5    
81.7    
81.9    
82.0    
82.2    
82.4    
82.6    
82.8    
83.0    
83.2    
83.4    
83.6    
83.8    
84.0    
84.2    
84.4    
84.6    
84.7    
84.9    
85.1    
85.3    
85.5    
85.7    
85.9    
86.1    
86.3    
86.5    
86.7    
86.9    
87.1    
87.3    
87.5    
87.6    
87.8    
88.0    
88.2    
88.4    
88.6    
88.8    
89.0    
89.2    
89.4    
89.6    
89.8    
90.0    
90.2    
90.3    
90.5    
90.7    
90.9    
91.1    
91.3    
91.5    
91.7    
91.9    
92.1    
92.3    
92.5    
92.7    
92.9    
93.1    
93.2    
93.4    
93.6    
93.8    
94.0    
94.2    
94.4    
94.6    
94.8    
95.0    
95.2    
95.4    
95.6    
95.8    
95.9    
96.1    
96.3    
96.5    
96.7    
96.9    
97.1    
97.3    
97.5    
97.7    
97.9    
98.1    
98.3    
98.5    
98.6    
98.8    
99.0    
99.2    
99.4    
99.6    
99.8    
-found 34 predictions from path traversal
Error with prediction: GlimmerHMM lend_intergenic: 15220, rend_intergenic: 15217  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17187, rend_intergenic: 15217  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43425, rend_intergenic: 41269  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86461, rend_intergenic: 72739  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92869, rend_intergenic: 90429  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123183, rend_intergenic: 113984  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128228, rend_intergenic: 126458  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130295, rend_intergenic: 128880  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141652, rend_intergenic: 130366  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146070, rend_intergenic: 142286  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 150105, rend_intergenic: 149999  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153076, rend_intergenic: 150113  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 154659, rend_intergenic: 153182  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165384, rend_intergenic: 154744  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171215, rend_intergenic: 169352  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 172024, rend_intergenic: 171450  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 174340, rend_intergenic: 172044  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 201750, rend_intergenic: 196011  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 206812, rend_intergenic: 201983  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 208423, rend_intergenic: 208303  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 29 predictions persist after filtering for low support