-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_14/scaffold_14_8068871-8311675 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_14-snap.1690-T1 Valid prediction for Augustus_model.g22915.t1 Valid prediction for snap_scaffold_14-snap.1676-T1 Valid prediction for GlimmerHMM_glimmerT_34301-T1 Valid prediction for GlimmerHMM_glimmerT_34308-T1 Valid prediction for snap_scaffold_14-snap.1680-T1 Valid prediction for snap_scaffold_14-snap.1701-T1 Valid prediction for snap_scaffold_14-snap.1664-T1 Valid prediction for snap_scaffold_14-snap.1668-T1 Valid prediction for snap_scaffold_14-snap.1675-T1 Valid prediction for snap_scaffold_14-snap.1678-T1 Valid prediction for GlimmerHMM_glimmerT_34281-T1 Valid prediction for snap_scaffold_14-snap.1670-T1 Valid prediction for CodingQuarry_transcript_15736-T1 Valid prediction for Augustus_model.g22883.t1 Valid prediction for GlimmerHMM_glimmerT_34288-T1 Valid prediction for Augustus_model.g22887.t1 Valid prediction for GlimmerHMM_glimmerT_34276-T1 Valid prediction for snap_scaffold_14-snap.1681-T1 Valid prediction for pasa_asmbl_12210.p1 Valid prediction for GlimmerHMM_glimmerT_34277-T1 Valid prediction for snap_scaffold_14-snap.1667-T1 Valid prediction for Augustus_model.g22886.t1 Valid prediction for Augustus_model.g22892.t1 Valid prediction for HiQ_model.g22910.t1 Valid prediction for snap_scaffold_14-snap.1692-T1 Valid prediction for GlimmerHMM_glimmerT_34284-T1 Valid prediction for HiQ_model.g22902.t1 Valid prediction for GlimmerHMM_glimmerT_34285-T1 Valid prediction for Augustus_model.g22914.t1 Valid prediction for Augustus_model.g22890.t1 Valid prediction for Augustus_model.g22907.t1 Valid prediction for snap_scaffold_14-snap.1674-T1 Valid prediction for snap_scaffold_14-snap.1706-T1 Valid prediction for snap_scaffold_14-snap.1696-T1 Valid prediction for snap_scaffold_14-snap.1698-T1 Valid prediction for pasa_asmbl_12214.p1 Valid prediction for snap_scaffold_14-snap.1705-T1 Valid prediction for GlimmerHMM_glimmerT_34304-T1 Couldn't classify 236317, 236425 Couldn't classify 237431, 237565 Sorry, prediction pasa_asmbl_12220.p1 fails validation. (GAT) AG 236317-236425 GT AGG (GAG) AG 236674-236765 GT AGG (CAG) AG 237431-237565 CT GAC -recovered pasa_asmbl_12220.p1, internal, 236317, 236425 -recovered pasa_asmbl_12220.p1, internal, 236674, 236765 Valid prediction for GlimmerHMM_glimmerT_34306-T1 Valid prediction for GlimmerHMM_glimmerT_34291-T1 Valid prediction for GlimmerHMM_glimmerT_34310-T1 Valid prediction for snap_scaffold_14-snap.1661-T1 Valid prediction for CodingQuarry_transcript_15748-T1 Valid prediction for snap_scaffold_14-snap.1699-T1 Valid prediction for CodingQuarry_transcript_15743-T1 Valid prediction for CodingQuarry_transcript_15749-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for CodingQuarry_transcript_15730-T1 Valid prediction for GlimmerHMM_glimmerT_34300-T1 Valid prediction for GlimmerHMM_glimmerT_34297-T1 Valid prediction for GlimmerHMM_glimmerT_34286-T1 Valid prediction for snap_scaffold_14-snap.1683-T1 Valid prediction for GlimmerHMM_glimmerT_34299-T1 Valid prediction for GlimmerHMM_glimmerT_34282-T1 Valid prediction for snap_scaffold_14-snap.1691-T1 Valid prediction for CodingQuarry_transcript_15737-T1 Valid prediction for CodingQuarry_transcript_15731-T1 Valid prediction for pasa_asmbl_13260.p1 Valid prediction for GlimmerHMM_glimmerT_34292-T1 Valid prediction for CodingQuarry_transcript_15734-T1 Valid prediction for pasa_asmbl_13261.p1 Valid prediction for snap_scaffold_14-snap.1688-T1 Valid prediction for HiQ_model.g22904.t1 Valid prediction for Augustus_model.g22909.t1 Valid prediction for snap_scaffold_14-snap.1687-T1 Couldn't classify 70041, 70269 Couldn't classify 71223, 71237 Sorry, prediction pasa_asmbl_13266.p1 fails validation. (ATC) AG 70041-70269 GT CGG (AGC) AG 70560-70730 GT TTG (CTG) AG 70949-71097 GT TTG (GGG) AG 71223-71237 GC CAG -recovered pasa_asmbl_13266.p1, internal, 70041, 70269 -recovered pasa_asmbl_13266.p1, internal, 70560, 70730 -recovered pasa_asmbl_13266.p1, internal, 70949, 71097 -recovered pasa_asmbl_13266.p1, internal, 71223, 71237 Valid prediction for GlimmerHMM_glimmerT_34275-T1 Couldn't classify 215719, 215838 Sorry, prediction pasa_asmbl_13243.p1 fails validation. (ACA) GC 215719-215838 GT GGG (GTA) AG 215945-216197 GT AGG (GCA) AG 217882-217961 AC GAA -recovered pasa_asmbl_13243.p1, terminal, 217882, 217961 -recovered pasa_asmbl_13243.p1, internal, 215945, 216197 Valid prediction for CodingQuarry_transcript_15746-T1 Valid prediction for snap_scaffold_14-snap.1672-T1 Valid prediction for pasa_asmbl_13251.p1 Valid prediction for CodingQuarry_transcript_15732-T1 Valid prediction for Augustus_model.g22905.t1 Valid prediction for snap_scaffold_14-snap.1685-T1 Valid prediction for pasa_asmbl_13284.p1 Valid prediction for GlimmerHMM_glimmerT_34309-T1 Valid prediction for GlimmerHMM_glimmerT_34280-T1 Couldn't classify 215719, 215838 Sorry, prediction pasa_asmbl_13246.p1 fails validation. (ACA) GC 215719-215838 GT GGG (GTA) AG 215945-216214 GC GAG -recovered pasa_asmbl_13246.p1, terminal, 215945, 216214 -recovered pasa_asmbl_13246.p1, internal, 215945, 216214 Valid prediction for snap_scaffold_14-snap.1666-T1 Couldn't classify 48771, 49151 Sorry, prediction pasa_asmbl_13276.p1 fails validation. (CAA) AA 48771-49151 GG AAG Valid prediction for Augustus_model.g22896.t1 Valid prediction for snap_scaffold_14-snap.1662-T1 Couldn't classify 59648, 59777 Couldn't classify 61887, 61907 Sorry, prediction pasa_asmbl_13269.p1 fails validation. (AGT) CC 59648-59777 GT TGG (CAG) AG 59886-60085 GT AGG (GGT) AG 60192-60260 GT TCG (GGA) AG 60395-60595 GT AGG (GGT) AG 61343-61471 GT AGG (GTG) AG 61887-61907 CA AGC -recovered pasa_asmbl_13269.p1, internal, 59886, 60085 -recovered pasa_asmbl_13269.p1, internal, 60192, 60260 -recovered pasa_asmbl_13269.p1, internal, 60395, 60595 -recovered pasa_asmbl_13269.p1, internal, 61343, 61471 Valid prediction for snap_scaffold_14-snap.1660-T1 Couldn't classify 56953, 57417 Sorry, prediction pasa_asmbl_13273.p1 fails validation. (TCA) AA 56953-57417 GG CAG Valid prediction for HiQ_model.g22897.t1 Valid prediction for GlimmerHMM_glimmerT_34307-T1 Valid prediction for snap_scaffold_14-snap.1700-T1 Valid prediction for GlimmerHMM_glimmerT_34303-T1 Valid prediction for Augustus_model.g22912.t1 Valid prediction for HiQ_model.g22900.t1 Valid prediction for HiQ_model.g22901.t1 Valid prediction for GlimmerHMM_glimmerT_34287-T1 Valid prediction for CodingQuarry_transcript_15739-T1 Valid prediction for pasa_asmbl_13249.p1 Valid prediction for snap_scaffold_14-snap.1693-T1 Valid prediction for CodingQuarry_transcript_15744-T1 Valid prediction for Augustus_model.g22888.t1 Valid prediction for snap_scaffold_14-snap.1694-T1 Couldn't classify 47985, 48392 Sorry, prediction pasa_asmbl_13277.p1 fails validation. (GCT) CC 47985-48392 GC GGG Valid prediction for GlimmerHMM_glimmerT_34295-T1 Valid prediction for Augustus_model.g22889.t1 Valid prediction for GlimmerHMM_glimmerT_34283-T1 Valid prediction for GlimmerHMM_glimmerT_34302-T1 Valid prediction for Augustus_model.g22891.t1 Valid prediction for snap_scaffold_14-snap.1695-T1 Valid prediction for snap_scaffold_14-snap.1704-T1 Valid prediction for Augustus_model.g22906.t1 Valid prediction for snap_scaffold_14-snap.1708-T1 Valid prediction for Augustus_model.g22903.t1 Valid prediction for CodingQuarry_transcript_15747-T1 Valid prediction for GlimmerHMM_glimmerT_34278-T1 Valid prediction for snap_scaffold_14-snap.1686-T1 Valid prediction for Augustus_model.g22884.t1 Valid prediction for snap_scaffold_14-snap.1659-T1 Valid prediction for snap_scaffold_14-snap.1682-T1 Valid prediction for snap_scaffold_14-snap.1684-T1 Valid prediction for snap_scaffold_14-snap.1703-T1 Valid prediction for snap_scaffold_14-snap.1671-T1 Valid prediction for snap_scaffold_14-snap.1689-T1 Valid prediction for GlimmerHMM_glimmerT_34293-T1 Valid prediction for Augustus_model.g22895.t1 Valid prediction for Augustus_model.g22911.t1 Couldn't classify 240282, 240632 Sorry, prediction pasa_asmbl_13239.p2 fails validation. (CTG) CC 240282-240632 GC CCG Valid prediction for CodingQuarry_transcript_15741-T1 Valid prediction for HiQ_model.g22898.t1 Valid prediction for HiQ_model.g22913.t1 Valid prediction for CodingQuarry_transcript_15740-T1 Valid prediction for snap_scaffold_14-snap.1669-T1 Valid prediction for Augustus_model.g22885.t1 Valid prediction for CodingQuarry_transcript_15745-T1 Valid prediction for Augustus_model.g22882.t1 Valid prediction for GlimmerHMM_glimmerT_34305-T1 Valid prediction for snap_scaffold_14-snap.1697-T1 Valid prediction for GlimmerHMM_glimmerT_34298-T1 Valid prediction for snap_scaffold_14-snap.1677-T1 Valid prediction for snap_scaffold_14-snap.1663-T1 Valid prediction for CodingQuarry_transcript_15738-T1 Valid prediction for snap_scaffold_14-snap.1673-T1 Valid prediction for Augustus_model.g22893.t1 Valid prediction for snap_scaffold_14-snap.1679-T1 Sorry, intron length (9) is less than minimum required (10) Valid prediction for GlimmerHMM_glimmerT_34290-T1 Valid prediction for GlimmerHMM_glimmerT_34289-T1 Valid prediction for HiQ_model.g22899.t1 Valid prediction for GlimmerHMM_glimmerT_34294-T1 Couldn't classify 58192, 58572 Sorry, prediction pasa_asmbl_13272.p1 fails validation. (CAG) AG 58192-58572 GG GAG Valid prediction for Augustus_model.g22894.t1 Valid prediction for pasa_asmbl_13279.p1 Valid prediction for CodingQuarry_transcript_15733-T1 Valid prediction for snap_scaffold_14-snap.1707-T1 Couldn't classify 239934, 240048 Sorry, prediction pasa_asmbl_13240.p1 fails validation. (ATG) AG 239075-239472 GT AGG (GGT) AG 239749-239841 GT AGG (AGA) AG 239934-240048 AT GCA -recovered pasa_asmbl_13240.p1, initial, 239075, 239472 -recovered pasa_asmbl_13240.p1, internal, 239075, 239472 -recovered pasa_asmbl_13240.p1, internal, 239749, 239841 Valid prediction for GlimmerHMM_glimmerT_34279-T1 Valid prediction for GlimmerHMM_glimmerT_34296-T1 Couldn't classify 63006, 63123 Couldn't classify 65146, 65575 Sorry, prediction pasa_asmbl_13268.p1 fails validation. (CCA) CA 63006-63123 GT AGG (AGT) AG 63416-63559 GT TGG (ATT) AG 63644-63736 GT AGG (CAA) AG 64044-64271 GT TGG (GCA) AG 64738-64808 GT AGG (ATT) AG 64896-65035 GT ATG (GTG) AG 65146-65575 GC GGG -recovered pasa_asmbl_13268.p1, internal, 63416, 63559 -recovered pasa_asmbl_13268.p1, internal, 63644, 63736 -recovered pasa_asmbl_13268.p1, internal, 64044, 64271 -recovered pasa_asmbl_13268.p1, internal, 64738, 64808 -recovered pasa_asmbl_13268.p1, internal, 64896, 65035 -recovered pasa_asmbl_13268.p1, internal, 65146, 65575 Valid prediction for snap_scaffold_14-snap.1702-T1 Valid prediction for Augustus_model.g22908.t1 Valid prediction for snap_scaffold_14-snap.1665-T1 Couldn't classify 58942, 59319 Sorry, prediction pasa_asmbl_13271.p1 fails validation. (CAT) CC 58942-59319 AA ATA -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 15109, rend_intergenic: 9079 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 23743, rend_intergenic: 19106 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 28662, rend_intergenic: 23750 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 42084, rend_intergenic: 39209 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 59861, rend_intergenic: 44641 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 110764, rend_intergenic: 87751 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 113538, rend_intergenic: 111109 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 115273, rend_intergenic: 114721 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 122693, rend_intergenic: 115483 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 131995, rend_intergenic: 122982 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 168231, rend_intergenic: 164147 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 241076, rend_intergenic: 234593 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: GlimmerHMM lend_intergenic: 157955, rend_intergenic: 157952 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 242805 -exon list size: 519 building trellis 0.2 0.4 0.6 0.8 1.0 1.2 1.3 1.5 1.7 1.9 2.1 2.3 2.5 2.7 2.9 3.1 3.3 3.5 3.6 3.8 4.0 4.2 4.4 4.6 4.8 5.0 5.2 5.4 5.6 5.8 6.0 6.1 6.3 6.5 6.7 6.9 7.1 7.3 7.5 7.7 7.9 8.1 8.3 8.4 8.6 8.8 9.0 9.2 9.4 9.6 9.8 10.0 10.2 10.4 10.6 10.7 10.9 11.1 11.3 11.5 11.7 11.9 12.1 12.3 12.5 12.7 12.9 13.1 13.2 13.4 13.6 13.8 14.0 14.2 14.4 14.6 14.8 15.0 15.2 15.4 15.5 15.7 15.9 16.1 16.3 16.5 16.7 16.9 17.1 17.3 17.5 17.7 17.9 18.0 18.2 18.4 18.6 18.8 19.0 19.2 19.4 19.6 19.8 20.0 20.2 20.3 20.5 20.7 20.9 21.1 21.3 21.5 21.7 21.9 22.1 22.3 22.5 22.6 22.8 23.0 23.2 23.4 23.6 23.8 24.0 24.2 24.4 24.6 24.8 25.0 25.1 25.3 25.5 25.7 25.9 26.1 26.3 26.5 26.7 26.9 27.1 27.3 27.4 27.6 27.8 28.0 28.2 28.4 28.6 28.8 29.0 29.2 29.4 29.6 29.8 29.9 30.1 30.3 30.5 30.7 30.9 31.1 31.3 31.5 31.7 31.9 32.1 32.2 32.4 32.6 32.8 33.0 33.2 33.4 33.6 33.8 34.0 34.2 34.4 34.5 34.7 34.9 35.1 35.3 35.5 35.7 35.9 36.1 36.3 36.5 36.7 36.9 37.0 37.2 37.4 37.6 37.8 38.0 38.2 38.4 38.6 38.8 39.0 39.2 39.3 39.5 39.7 39.9 40.1 40.3 40.5 40.7 40.9 41.1 41.3 41.5 41.7 41.8 42.0 42.2 42.4 42.6 42.8 43.0 43.2 43.4 43.6 43.8 44.0 44.1 44.3 44.5 44.7 44.9 45.1 45.3 45.5 45.7 45.9 46.1 46.3 46.4 46.6 46.8 47.0 47.2 47.4 47.6 47.8 48.0 48.2 48.4 48.6 48.8 48.9 49.1 49.3 49.5 49.7 49.9 50.1 50.3 50.5 50.7 50.9 51.1 51.2 51.4 51.6 51.8 52.0 52.2 52.4 52.6 52.8 53.0 53.2 53.4 53.6 53.7 53.9 54.1 54.3 54.5 54.7 54.9 55.1 55.3 55.5 55.7 55.9 56.0 56.2 56.4 56.6 56.8 57.0 57.2 57.4 57.6 57.8 58.0 58.2 58.3 58.5 58.7 58.9 59.1 59.3 59.5 59.7 59.9 60.1 60.3 60.5 60.7 60.8 61.0 61.2 61.4 61.6 61.8 62.0 62.2 62.4 62.6 62.8 63.0 63.1 63.3 63.5 63.7 63.9 64.1 64.3 64.5 64.7 64.9 65.1 65.3 65.5 65.6 65.8 66.0 66.2 66.4 66.6 66.8 67.0 67.2 67.4 67.6 67.8 67.9 68.1 68.3 68.5 68.7 68.9 69.1 69.3 69.5 69.7 69.9 70.1 70.2 70.4 70.6 70.8 71.0 71.2 71.4 71.6 71.8 72.0 72.2 72.4 72.6 72.7 72.9 73.1 73.3 73.5 73.7 73.9 74.1 74.3 74.5 74.7 74.9 75.0 75.2 75.4 75.6 75.8 76.0 76.2 76.4 76.6 76.8 77.0 77.2 77.4 77.5 77.7 77.9 78.1 78.3 78.5 78.7 78.9 79.1 79.3 79.5 79.7 79.8 80.0 80.2 80.4 80.6 80.8 81.0 81.2 81.4 81.6 81.8 82.0 82.1 82.3 82.5 82.7 82.9 83.1 83.3 83.5 83.7 83.9 84.1 84.3 84.5 84.6 84.8 85.0 85.2 85.4 85.6 85.8 86.0 86.2 86.4 86.6 86.8 86.9 87.1 87.3 87.5 87.7 87.9 88.1 88.3 88.5 88.7 88.9 89.1 89.3 89.4 89.6 89.8 90.0 90.2 90.4 90.6 90.8 91.0 91.2 91.4 91.6 91.7 91.9 92.1 92.3 92.5 92.7 92.9 93.1 93.3 93.5 93.7 93.9 94.0 94.2 94.4 94.6 94.8 95.0 95.2 95.4 95.6 95.8 96.0 96.2 96.4 96.5 96.7 96.9 97.1 97.3 97.5 97.7 97.9 98.1 98.3 98.5 98.7 98.8 99.0 99.2 99.4 99.6 99.8 -found 43 predictions from path traversal Error with prediction: snap lend_intergenic: 15109, rend_intergenic: 9079 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 23743, rend_intergenic: 19106 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 28662, rend_intergenic: 23750 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 42084, rend_intergenic: 39209 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 59861, rend_intergenic: 44641 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 110764, rend_intergenic: 87751 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 113538, rend_intergenic: 111109 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 115273, rend_intergenic: 114721 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 122693, rend_intergenic: 115483 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 131995, rend_intergenic: 122982 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 168231, rend_intergenic: 164147 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 241076, rend_intergenic: 234593 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: GlimmerHMM lend_intergenic: 157955, rend_intergenic: 157952 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 37 predictions persist after filtering for low support