-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_14/scaffold_14_6933461-7094834

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for HiQ_model.g22785.t1
Valid prediction for snap_scaffold_14-snap.1420-T1
Valid prediction for GlimmerHMM_glimmerT_34107-T1
Valid prediction for snap_scaffold_14-snap.1452-T1
Valid prediction for CodingQuarry_transcript_15685-T1
Valid prediction for GlimmerHMM_glimmerT_34106-T1
Valid prediction for Augustus_model.g22774.t1
Valid prediction for snap_scaffold_14-snap.1449-T1
Valid prediction for snap_scaffold_14-snap.1440-T1
Valid prediction for pasa_asmbl_12123.p1
Valid prediction for GlimmerHMM_glimmerT_34091-T1
Valid prediction for Augustus_model.g22789.t1
Valid prediction for snap_scaffold_14-snap.1446-T1
Valid prediction for snap_scaffold_14-snap.1422-T1
Valid prediction for HiQ_model.g22773.t1
Valid prediction for snap_scaffold_14-snap.1427-T1
Valid prediction for snap_scaffold_14-snap.1430-T1
Valid prediction for CodingQuarry_transcript_15689-T1
Valid prediction for CodingQuarry_transcript_15684-T1
Valid prediction for snap_scaffold_14-snap.1438-T1
Valid prediction for GlimmerHMM_glimmerT_34090-T1
Valid prediction for snap_scaffold_14-snap.1421-T1
Valid prediction for Augustus_model.g22781.t1
Valid prediction for Augustus_model.g22792.t1
Valid prediction for GlimmerHMM_glimmerT_34100-T1
Couldn't classify 87404, 87458
Sorry, prediction pasa_asmbl_12125.p1 fails validation.
(AAG)	 CC	87404-87458	GT	TGG
(AGA)	 AG	87909-87993	GT	GGG
(GCC)	 AG	88777-88855	GT	CGG
(GTG)	 AG	89523-89672	GT	AGG
(GCG)	 AG	90395-90529	GT	GGG
(TTG)	 AG	90648-90842	GT	AGG
(ATC)	 AG	90939-91189	GT	AGG
(GTA)	 AG	91516-91567	GT	GGG
(GTG)	 AG	93034-93205	GT	CGG
(ACG)	 AG	93561-93684	GT	ACG
(GGC)	 AG	93991-94066	GT	GGG
(GTT)	 AG	95009-95068	GT	TGG
(CAA)	 AG	95622-95658	GT	AGG
(AGT)	 AG	95767-95921	AC	AGA
-recovered pasa_asmbl_12125.p1, terminal, 95767, 95921
-recovered pasa_asmbl_12125.p1, internal, 87909, 87993
-recovered pasa_asmbl_12125.p1, internal, 88777, 88855
-recovered pasa_asmbl_12125.p1, internal, 89523, 89672
-recovered pasa_asmbl_12125.p1, internal, 90395, 90529
-recovered pasa_asmbl_12125.p1, internal, 90648, 90842
-recovered pasa_asmbl_12125.p1, internal, 90939, 91189
-recovered pasa_asmbl_12125.p1, internal, 91516, 91567
-recovered pasa_asmbl_12125.p1, internal, 93034, 93205
-recovered pasa_asmbl_12125.p1, internal, 93561, 93684
-recovered pasa_asmbl_12125.p1, internal, 93991, 94066
-recovered pasa_asmbl_12125.p1, internal, 95009, 95068
-recovered pasa_asmbl_12125.p1, internal, 95622, 95658
Valid prediction for HiQ_model.g22786.t1
Valid prediction for GlimmerHMM_glimmerT_34111-T1
Valid prediction for snap_scaffold_14-snap.1426-T1
Valid prediction for pasa_asmbl_12124.p1
Valid prediction for GlimmerHMM_glimmerT_34113-T1
Valid prediction for HiQ_model.g22772.t1
Valid prediction for GlimmerHMM_glimmerT_34112-T1
Valid prediction for GlimmerHMM_glimmerT_34088-T1
Valid prediction for GlimmerHMM_glimmerT_34105-T1
Valid prediction for pasa_asmbl_12119.p1
Valid prediction for snap_scaffold_14-snap.1447-T1
Valid prediction for snap_scaffold_14-snap.1429-T1
Valid prediction for snap_scaffold_14-snap.1436-T1
Valid prediction for snap_scaffold_14-snap.1433-T1
Valid prediction for GlimmerHMM_glimmerT_34089-T1
Valid prediction for snap_scaffold_14-snap.1441-T1
Valid prediction for GlimmerHMM_glimmerT_34117-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g22776.t1
Valid prediction for Augustus_model.g22777.t1
Valid prediction for GlimmerHMM_glimmerT_34114-T1
Valid prediction for snap_scaffold_14-snap.1435-T1
Valid prediction for GlimmerHMM_glimmerT_34116-T1
Valid prediction for GlimmerHMM_glimmerT_34115-T1
Valid prediction for HiQ_model.g22779.t1
Valid prediction for GlimmerHMM_glimmerT_34093-T1
Valid prediction for Augustus_model.g22787.t1
Valid prediction for snap_scaffold_14-snap.1451-T1
Valid prediction for HiQ_model.g22784.t1
Valid prediction for HiQ_model.g22780.t1
Valid prediction for snap_scaffold_14-snap.1448-T1
Valid prediction for snap_scaffold_14-snap.1445-T1
Valid prediction for HiQ_model.g22775.t1
Valid prediction for GlimmerHMM_glimmerT_34104-T1
Valid prediction for GlimmerHMM_glimmerT_34095-T1
Valid prediction for pasa_asmbl_13173.p2
Valid prediction for snap_scaffold_14-snap.1418-T1
Valid prediction for snap_scaffold_14-snap.1443-T1
Valid prediction for snap_scaffold_14-snap.1428-T1
Valid prediction for GlimmerHMM_glimmerT_34098-T1
Valid prediction for snap_scaffold_14-snap.1431-T1
Valid prediction for Augustus_model.g22788.t1
Valid prediction for snap_scaffold_14-snap.1423-T1
Valid prediction for pasa_asmbl_13170.p1
Valid prediction for Augustus_model.g22782.t1
Valid prediction for snap_scaffold_14-snap.1444-T1
Valid prediction for snap_scaffold_14-snap.1454-T1
Valid prediction for snap_scaffold_14-snap.1432-T1
Valid prediction for GlimmerHMM_glimmerT_34099-T1
Couldn't classify 144089, 144129
Couldn't classify 144971, 145078
Sorry, prediction pasa_asmbl_13167.p1 fails validation.
(ACA)	 AC	144089-144129	GT	AGG
(GTC)	 AG	144299-144374	GT	AGG
(GCA)	 AG	144729-144881	GT	CGG
(GGA)	 AG	144971-145078	TT	AGT
-recovered pasa_asmbl_13167.p1, internal, 144299, 144374
-recovered pasa_asmbl_13167.p1, internal, 144729, 144881
Valid prediction for CodingQuarry_transcript_15688-T1
Valid prediction for snap_scaffold_14-snap.1450-T1
Valid prediction for GlimmerHMM_glimmerT_34096-T1
Valid prediction for GlimmerHMM_glimmerT_34092-T1
Valid prediction for snap_scaffold_14-snap.1419-T1
Valid prediction for snap_scaffold_14-snap.1434-T1
Valid prediction for snap_scaffold_14-snap.1453-T1
Valid prediction for GlimmerHMM_glimmerT_34101-T1
Valid prediction for GlimmerHMM_glimmerT_34094-T1
Valid prediction for snap_scaffold_14-snap.1425-T1
Valid prediction for snap_scaffold_14-snap.1456-T1
Valid prediction for Augustus_model.g22783.t1
Valid prediction for snap_scaffold_14-snap.1439-T1
Valid prediction for snap_scaffold_14-snap.1424-T1
Valid prediction for Augustus_model.g22790.t1
Valid prediction for snap_scaffold_14-snap.1442-T1
Valid prediction for CodingQuarry_transcript_15686-T1
Valid prediction for CodingQuarry_transcript_15687-T1
Valid prediction for GlimmerHMM_glimmerT_34108-T1
Valid prediction for snap_scaffold_14-snap.1455-T1
Valid prediction for GlimmerHMM_glimmerT_34103-T1
Valid prediction for Augustus_model.g22778.t1
Valid prediction for GlimmerHMM_glimmerT_34109-T1
Valid prediction for GlimmerHMM_glimmerT_34087-T1
Valid prediction for GlimmerHMM_glimmerT_34102-T1
Valid prediction for Augustus_model.g22791.t1
Valid prediction for GlimmerHMM_glimmerT_34110-T1
Valid prediction for GlimmerHMM_glimmerT_34097-T1
Valid prediction for snap_scaffold_14-snap.1437-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 34932, rend_intergenic: 34267  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40449, rend_intergenic: 34970  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45306, rend_intergenic: 41965  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52382, rend_intergenic: 48224  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66972, rend_intergenic: 60104  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101328, rend_intergenic: 90331  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113746, rend_intergenic: 109399  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123930, rend_intergenic: 119831  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126171, rend_intergenic: 124959  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130021, rend_intergenic: 126349  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152591, rend_intergenic: 137215  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 161374
-exon list size: 319


building trellis

0.3    
0.6    
0.9    
1.2    
1.6    
1.9    
2.2    
2.5    
2.8    
3.1    
3.4    
3.7    
4.0    
4.4    
4.7    
5.0    
5.3    
5.6    
5.9    
6.2    
6.5    
6.9    
7.2    
7.5    
7.8    
8.1    
8.4    
8.7    
9.0    
9.3    
9.7    
10.0    
10.3    
10.6    
10.9    
11.2    
11.5    
11.8    
12.1    
12.5    
12.8    
13.1    
13.4    
13.7    
14.0    
14.3    
14.6    
15.0    
15.3    
15.6    
15.9    
16.2    
16.5    
16.8    
17.1    
17.4    
17.8    
18.1    
18.4    
18.7    
19.0    
19.3    
19.6    
19.9    
20.2    
20.6    
20.9    
21.2    
21.5    
21.8    
22.1    
22.4    
22.7    
23.1    
23.4    
23.7    
24.0    
24.3    
24.6    
24.9    
25.2    
25.5    
25.9    
26.2    
26.5    
26.8    
27.1    
27.4    
27.7    
28.0    
28.3    
28.7    
29.0    
29.3    
29.6    
29.9    
30.2    
30.5    
30.8    
31.2    
31.5    
31.8    
32.1    
32.4    
32.7    
33.0    
33.3    
33.6    
34.0    
34.3    
34.6    
34.9    
35.2    
35.5    
35.8    
36.1    
36.4    
36.8    
37.1    
37.4    
37.7    
38.0    
38.3    
38.6    
38.9    
39.3    
39.6    
39.9    
40.2    
40.5    
40.8    
41.1    
41.4    
41.7    
42.1    
42.4    
42.7    
43.0    
43.3    
43.6    
43.9    
44.2    
44.5    
44.9    
45.2    
45.5    
45.8    
46.1    
46.4    
46.7    
47.0    
47.4    
47.7    
48.0    
48.3    
48.6    
48.9    
49.2    
49.5    
49.8    
50.2    
50.5    
50.8    
51.1    
51.4    
51.7    
52.0    
52.3    
52.6    
53.0    
53.3    
53.6    
53.9    
54.2    
54.5    
54.8    
55.1    
55.5    
55.8    
56.1    
56.4    
56.7    
57.0    
57.3    
57.6    
57.9    
58.3    
58.6    
58.9    
59.2    
59.5    
59.8    
60.1    
60.4    
60.7    
61.1    
61.4    
61.7    
62.0    
62.3    
62.6    
62.9    
63.2    
63.6    
63.9    
64.2    
64.5    
64.8    
65.1    
65.4    
65.7    
66.0    
66.4    
66.7    
67.0    
67.3    
67.6    
67.9    
68.2    
68.5    
68.8    
69.2    
69.5    
69.8    
70.1    
70.4    
70.7    
71.0    
71.3    
71.7    
72.0    
72.3    
72.6    
72.9    
73.2    
73.5    
73.8    
74.1    
74.5    
74.8    
75.1    
75.4    
75.7    
76.0    
76.3    
76.6    
76.9    
77.3    
77.6    
77.9    
78.2    
78.5    
78.8    
79.1    
79.4    
79.8    
80.1    
80.4    
80.7    
81.0    
81.3    
81.6    
81.9    
82.2    
82.6    
82.9    
83.2    
83.5    
83.8    
84.1    
84.4    
84.7    
85.0    
85.4    
85.7    
86.0    
86.3    
86.6    
86.9    
87.2    
87.5    
87.9    
88.2    
88.5    
88.8    
89.1    
89.4    
89.7    
90.0    
90.3    
90.7    
91.0    
91.3    
91.6    
91.9    
92.2    
92.5    
92.8    
93.1    
93.5    
93.8    
94.1    
94.4    
94.7    
95.0    
95.3    
95.6    
96.0    
96.3    
96.6    
96.9    
97.2    
97.5    
97.8    
98.1    
98.4    
98.8    
99.1    
99.4    
99.7    
-found 30 predictions from path traversal
Error with prediction: snap lend_intergenic: 34932, rend_intergenic: 34267  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40449, rend_intergenic: 34970  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45306, rend_intergenic: 41965  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52382, rend_intergenic: 48224  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66972, rend_intergenic: 60104  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101328, rend_intergenic: 90331  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113746, rend_intergenic: 109399  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123930, rend_intergenic: 119831  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126171, rend_intergenic: 124959  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130021, rend_intergenic: 126349  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152591, rend_intergenic: 137215  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 23 predictions persist after filtering for low support