-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_14/scaffold_14_6050191-6265505

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g22687.t1
Valid prediction for snap_scaffold_14-snap.1234-T1
Valid prediction for snap_scaffold_14-snap.1225-T1
Valid prediction for snap_scaffold_14-snap.1268-T1
Valid prediction for Augustus_model.g22695.t1
Valid prediction for GlimmerHMM_glimmerT_33967-T1
Valid prediction for GlimmerHMM_glimmerT_33970-T1
Valid prediction for GlimmerHMM_glimmerT_33969-T1
Valid prediction for snap_scaffold_14-snap.1253-T1
Valid prediction for snap_scaffold_14-snap.1262-T1
Valid prediction for snap_scaffold_14-snap.1249-T1
Valid prediction for snap_scaffold_14-snap.1257-T1
Valid prediction for snap_scaffold_14-snap.1250-T1
Valid prediction for GlimmerHMM_glimmerT_33957-T1
Valid prediction for GlimmerHMM_glimmerT_33974-T1
Valid prediction for snap_scaffold_14-snap.1269-T1
Valid prediction for snap_scaffold_14-snap.1219-T1
Valid prediction for GlimmerHMM_glimmerT_33966-T1
Valid prediction for Augustus_model.g22689.t1
Valid prediction for snap_scaffold_14-snap.1267-T1
Valid prediction for GlimmerHMM_glimmerT_33975-T1
Valid prediction for GlimmerHMM_glimmerT_33951-T1
Valid prediction for Augustus_model.g22682.t1
Valid prediction for snap_scaffold_14-snap.1239-T1
Valid prediction for snap_scaffold_14-snap.1227-T1
Valid prediction for snap_scaffold_14-snap.1222-T1
Valid prediction for snap_scaffold_14-snap.1228-T1
Valid prediction for snap_scaffold_14-snap.1260-T1
Valid prediction for GlimmerHMM_glimmerT_33955-T1
Valid prediction for Augustus_model.g22684.t1
Valid prediction for GlimmerHMM_glimmerT_33948-T1
Valid prediction for snap_scaffold_14-snap.1245-T1
Valid prediction for GlimmerHMM_glimmerT_33978-T1
Valid prediction for snap_scaffold_14-snap.1265-T1
Valid prediction for GlimmerHMM_glimmerT_33973-T1
Valid prediction for GlimmerHMM_glimmerT_33954-T1
Valid prediction for snap_scaffold_14-snap.1254-T1
Valid prediction for snap_scaffold_14-snap.1273-T1
Valid prediction for Augustus_model.g22693.t1
Valid prediction for GlimmerHMM_glimmerT_33947-T1
Valid prediction for snap_scaffold_14-snap.1231-T1
Valid prediction for snap_scaffold_14-snap.1255-T1
Valid prediction for snap_scaffold_14-snap.1224-T1
Valid prediction for snap_scaffold_14-snap.1271-T1
Valid prediction for GlimmerHMM_glimmerT_33946-T1
Valid prediction for GlimmerHMM_glimmerT_33950-T1
Valid prediction for snap_scaffold_14-snap.1232-T1
Valid prediction for GlimmerHMM_glimmerT_33968-T1
Valid prediction for snap_scaffold_14-snap.1236-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_14-snap.1246-T1
Valid prediction for snap_scaffold_14-snap.1226-T1
Valid prediction for Augustus_model.g22681.t1
Valid prediction for GlimmerHMM_glimmerT_33976-T1
Valid prediction for Augustus_model.g22690.t1
Valid prediction for Augustus_model.g22691.t1
Valid prediction for GlimmerHMM_glimmerT_33965-T1
Valid prediction for Augustus_model.g22694.t1
Valid prediction for GlimmerHMM_glimmerT_33945-T1
Couldn't classify 151629, 151758
Sorry, prediction pasa_asmbl_13111.p1 fails validation.
(ATG)	 GT	150959-151395	GT	AGG
(ACT)	 AG	151629-151758	GA	GCG
-recovered pasa_asmbl_13111.p1, initial, 150959, 151395
Valid prediction for GlimmerHMM_glimmerT_33944-T1
Valid prediction for GlimmerHMM_glimmerT_33952-T1
Valid prediction for snap_scaffold_14-snap.1230-T1
Valid prediction for snap_scaffold_14-snap.1261-T1
Valid prediction for snap_scaffold_14-snap.1221-T1
Valid prediction for snap_scaffold_14-snap.1251-T1
Valid prediction for GlimmerHMM_glimmerT_33963-T1
Valid prediction for Augustus_model.g22688.t1
Valid prediction for GlimmerHMM_glimmerT_33972-T1
Valid prediction for snap_scaffold_14-snap.1252-T1
Valid prediction for snap_scaffold_14-snap.1233-T1
Valid prediction for snap_scaffold_14-snap.1248-T1
Valid prediction for GlimmerHMM_glimmerT_33959-T1
Valid prediction for snap_scaffold_14-snap.1241-T1
Valid prediction for GlimmerHMM_glimmerT_33979-T1
Valid prediction for snap_scaffold_14-snap.1238-T1
Valid prediction for snap_scaffold_14-snap.1240-T1
Valid prediction for Augustus_model.g22692.t1
Valid prediction for GlimmerHMM_glimmerT_33953-T1
Valid prediction for snap_scaffold_14-snap.1223-T1
Valid prediction for snap_scaffold_14-snap.1243-T1
Valid prediction for snap_scaffold_14-snap.1256-T1
Valid prediction for snap_scaffold_14-snap.1274-T1
Valid prediction for snap_scaffold_14-snap.1263-T1
Valid prediction for Augustus_model.g22686.t1
Valid prediction for GlimmerHMM_glimmerT_33949-T1
Valid prediction for GlimmerHMM_glimmerT_33958-T1
Valid prediction for snap_scaffold_14-snap.1270-T1
Valid prediction for snap_scaffold_14-snap.1266-T1
Valid prediction for snap_scaffold_14-snap.1247-T1
Valid prediction for snap_scaffold_14-snap.1235-T1
Valid prediction for snap_scaffold_14-snap.1242-T1
Valid prediction for GlimmerHMM_glimmerT_33960-T1
Valid prediction for snap_scaffold_14-snap.1220-T1
Valid prediction for GlimmerHMM_glimmerT_33971-T1
Valid prediction for snap_scaffold_14-snap.1259-T1
Valid prediction for snap_scaffold_14-snap.1272-T1
Valid prediction for snap_scaffold_14-snap.1229-T1
Valid prediction for GlimmerHMM_glimmerT_33962-T1
Valid prediction for Augustus_model.g22685.t1
Valid prediction for Augustus_model.g22683.t1
Valid prediction for snap_scaffold_14-snap.1258-T1
Valid prediction for snap_scaffold_14-snap.1244-T1
Valid prediction for GlimmerHMM_glimmerT_33977-T1
Valid prediction for snap_scaffold_14-snap.1237-T1
Valid prediction for snap_scaffold_14-snap.1264-T1
Valid prediction for GlimmerHMM_glimmerT_33964-T1
Couldn't classify 152587, 152997
Sorry, prediction pasa_asmbl_13110.p1 fails validation.
(AGT)	 GC	152587-152997	GG	GAG
Valid prediction for GlimmerHMM_glimmerT_33961-T1
Valid prediction for GlimmerHMM_glimmerT_33956-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 12935, rend_intergenic: 4138  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14225, rend_intergenic: 13333  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18087, rend_intergenic: 17294  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26907, rend_intergenic: 18101  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29237, rend_intergenic: 28552  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42349, rend_intergenic: 31307  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46447, rend_intergenic: 42572  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49677, rend_intergenic: 46608  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57815, rend_intergenic: 51525  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58814, rend_intergenic: 58312  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78067, rend_intergenic: 66372  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82187, rend_intergenic: 78248  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96307, rend_intergenic: 84645  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102950, rend_intergenic: 102862  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127978, rend_intergenic: 114247  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135353, rend_intergenic: 132448  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146562, rend_intergenic: 139337  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146763, rend_intergenic: 146760  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152694, rend_intergenic: 147286  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 163067, rend_intergenic: 153348  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165389, rend_intergenic: 164445  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 168307, rend_intergenic: 166317  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 181844, rend_intergenic: 171123  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 186489, rend_intergenic: 184228  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 191923, rend_intergenic: 187126  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 200248, rend_intergenic: 194967  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 207143, rend_intergenic: 201634  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 207824, rend_intergenic: 207292  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 213536, rend_intergenic: 208791  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 215315
-exon list size: 378


building trellis

0.3    
0.5    
0.8    
1.1    
1.3    
1.6    
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2.6    
2.9    
3.2    
3.4    
3.7    
3.9    
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4.5    
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5.0    
5.3    
5.5    
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6.3    
6.6    
6.8    
7.1    
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7.6    
7.9    
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10.0    
10.3    
10.5    
10.8    
11.1    
11.3    
11.6    
11.8    
12.1    
12.4    
12.6    
12.9    
13.2    
13.4    
13.7    
13.9    
14.2    
14.5    
14.7    
15.0    
15.3    
15.5    
15.8    
16.1    
16.3    
16.6    
16.8    
17.1    
17.4    
17.6    
17.9    
18.2    
18.4    
18.7    
18.9    
19.2    
19.5    
19.7    
20.0    
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20.5    
20.8    
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21.3    
21.6    
21.8    
22.1    
22.4    
22.6    
22.9    
23.2    
23.4    
23.7    
23.9    
24.2    
24.5    
24.7    
25.0    
25.3    
25.5    
25.8    
26.1    
26.3    
26.6    
26.8    
27.1    
27.4    
27.6    
27.9    
28.2    
28.4    
28.7    
28.9    
29.2    
29.5    
29.7    
30.0    
30.3    
30.5    
30.8    
31.1    
31.3    
31.6    
31.8    
32.1    
32.4    
32.6    
32.9    
33.2    
33.4    
33.7    
33.9    
34.2    
34.5    
34.7    
35.0    
35.3    
35.5    
35.8    
36.1    
36.3    
36.6    
36.8    
37.1    
37.4    
37.6    
37.9    
38.2    
38.4    
38.7    
38.9    
39.2    
39.5    
39.7    
40.0    
40.3    
40.5    
40.8    
41.1    
41.3    
41.6    
41.8    
42.1    
42.4    
42.6    
42.9    
43.2    
43.4    
43.7    
43.9    
44.2    
44.5    
44.7    
45.0    
45.3    
45.5    
45.8    
46.1    
46.3    
46.6    
46.8    
47.1    
47.4    
47.6    
47.9    
48.2    
48.4    
48.7    
48.9    
49.2    
49.5    
49.7    
50.0    
50.3    
50.5    
50.8    
51.1    
51.3    
51.6    
51.8    
52.1    
52.4    
52.6    
52.9    
53.2    
53.4    
53.7    
53.9    
54.2    
54.5    
54.7    
55.0    
55.3    
55.5    
55.8    
56.1    
56.3    
56.6    
56.8    
57.1    
57.4    
57.6    
57.9    
58.2    
58.4    
58.7    
58.9    
59.2    
59.5    
59.7    
60.0    
60.3    
60.5    
60.8    
61.1    
61.3    
61.6    
61.8    
62.1    
62.4    
62.6    
62.9    
63.2    
63.4    
63.7    
63.9    
64.2    
64.5    
64.7    
65.0    
65.3    
65.5    
65.8    
66.1    
66.3    
66.6    
66.8    
67.1    
67.4    
67.6    
67.9    
68.2    
68.4    
68.7    
68.9    
69.2    
69.5    
69.7    
70.0    
70.3    
70.5    
70.8    
71.1    
71.3    
71.6    
71.8    
72.1    
72.4    
72.6    
72.9    
73.2    
73.4    
73.7    
73.9    
74.2    
74.5    
74.7    
75.0    
75.3    
75.5    
75.8    
76.1    
76.3    
76.6    
76.8    
77.1    
77.4    
77.6    
77.9    
78.2    
78.4    
78.7    
78.9    
79.2    
79.5    
79.7    
80.0    
80.3    
80.5    
80.8    
81.1    
81.3    
81.6    
81.8    
82.1    
82.4    
82.6    
82.9    
83.2    
83.4    
83.7    
83.9    
84.2    
84.5    
84.7    
85.0    
85.3    
85.5    
85.8    
86.1    
86.3    
86.6    
86.8    
87.1    
87.4    
87.6    
87.9    
88.2    
88.4    
88.7    
88.9    
89.2    
89.5    
89.7    
90.0    
90.3    
90.5    
90.8    
91.1    
91.3    
91.6    
91.8    
92.1    
92.4    
92.6    
92.9    
93.2    
93.4    
93.7    
93.9    
94.2    
94.5    
94.7    
95.0    
95.3    
95.5    
95.8    
96.1    
96.3    
96.6    
96.8    
97.1    
97.4    
97.6    
97.9    
98.2    
98.4    
98.7    
98.9    
99.2    
99.5    
99.7    
-found 43 predictions from path traversal
Error with prediction: snap lend_intergenic: 12935, rend_intergenic: 4138  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14225, rend_intergenic: 13333  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18087, rend_intergenic: 17294  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26907, rend_intergenic: 18101  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29237, rend_intergenic: 28552  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42349, rend_intergenic: 31307  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46447, rend_intergenic: 42572  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49677, rend_intergenic: 46608  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57815, rend_intergenic: 51525  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58814, rend_intergenic: 58312  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78067, rend_intergenic: 66372  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82187, rend_intergenic: 78248  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96307, rend_intergenic: 84645  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102950, rend_intergenic: 102862  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127978, rend_intergenic: 114247  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135353, rend_intergenic: 132448  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146562, rend_intergenic: 139337  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146763, rend_intergenic: 146760  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152694, rend_intergenic: 147286  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 163067, rend_intergenic: 153348  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165389, rend_intergenic: 164445  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 168307, rend_intergenic: 166317  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 181844, rend_intergenic: 171123  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 186489, rend_intergenic: 184228  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 191923, rend_intergenic: 187126  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 200248, rend_intergenic: 194967  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 207143, rend_intergenic: 201634  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 207824, rend_intergenic: 207292  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 213536, rend_intergenic: 208791  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 14 predictions persist after filtering for low support