-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_14/scaffold_14_591676-966774

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_14-snap.135-T1
Valid prediction for snap_scaffold_14-snap.133-T1
Valid prediction for Augustus_model.g22176.t1
Couldn't classify 344860, 344932
Sorry, prediction pasa_asmbl_11785.p1 fails validation.
(GTT)	 AG	344860-344932	GT	AGG
(AAA)	 AG	345018-345109	GT	AGG
(AAA)	 AG	345207-345380	AA	GAA
-recovered pasa_asmbl_11785.p1, terminal, 345207, 345380
-recovered pasa_asmbl_11785.p1, internal, 344860, 344932
-recovered pasa_asmbl_11785.p1, internal, 345018, 345109
Valid prediction for Augustus_model.g22175.t1
Valid prediction for HiQ_model.g22174.t1
Valid prediction for snap_scaffold_14-snap.123-T1
Valid prediction for CodingQuarry_transcript_15530-T1
Valid prediction for snap_scaffold_14-snap.138-T1
Valid prediction for snap_scaffold_14-snap.111-T1
Valid prediction for Augustus_model.g22162.t1
Valid prediction for CodingQuarry_transcript_15532-T1
Valid prediction for GlimmerHMM_glimmerT_33189-T1
Valid prediction for snap_scaffold_14-snap.127-T1
Valid prediction for snap_scaffold_14-snap.130-T1
Valid prediction for Augustus_model.g22161.t1
Valid prediction for GlimmerHMM_glimmerT_33202-T1
Valid prediction for HiQ_model.g22170.t1
Valid prediction for GlimmerHMM_glimmerT_33186-T1
Valid prediction for snap_scaffold_14-snap.125-T1
Valid prediction for CodingQuarry_transcript_15535-T1
Valid prediction for snap_scaffold_14-snap.136-T1
Valid prediction for GlimmerHMM_glimmerT_33194-T1
Valid prediction for Augustus_model.g22169.t1
Valid prediction for CodingQuarry_transcript_15533-T1
Valid prediction for snap_scaffold_14-snap.139-T1
Valid prediction for snap_scaffold_14-snap.137-T1
Valid prediction for GlimmerHMM_glimmerT_33203-T1
Valid prediction for snap_scaffold_14-snap.124-T1
Valid prediction for GlimmerHMM_glimmerT_33201-T1
Valid prediction for pasa_asmbl_11777.p1
Valid prediction for Augustus_model.g22177.t1
Valid prediction for snap_scaffold_14-snap.134-T1
Valid prediction for GlimmerHMM_glimmerT_33190-T1
Valid prediction for GlimmerHMM_glimmerT_33197-T1
Valid prediction for CodingQuarry_transcript_15534-T1
Valid prediction for snap_scaffold_14-snap.129-T1
Valid prediction for Augustus_model.g22173.t1
Valid prediction for pasa_asmbl_11780.p1
Valid prediction for CodingQuarry_transcript_15531-T1
Valid prediction for GlimmerHMM_glimmerT_33191-T1
Valid prediction for snap_scaffold_14-snap.116-T1
Valid prediction for GlimmerHMM_glimmerT_33200-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_33204-T1
Valid prediction for snap_scaffold_14-snap.115-T1
Valid prediction for GlimmerHMM_glimmerT_33195-T1
Valid prediction for Augustus_model.g22179.t1
Valid prediction for CodingQuarry_transcript_15528-T1
Valid prediction for Augustus_model.g22163.t1
Valid prediction for HiQ_model.g22164.t1
Valid prediction for GlimmerHMM_glimmerT_33184-T1
Valid prediction for GlimmerHMM_glimmerT_33199-T1
Valid prediction for GlimmerHMM_glimmerT_33183-T1
Valid prediction for GlimmerHMM_glimmerT_33192-T1
Valid prediction for GlimmerHMM_glimmerT_33205-T1
Valid prediction for snap_scaffold_14-snap.128-T1
Valid prediction for GlimmerHMM_glimmerT_33196-T1
Valid prediction for snap_scaffold_14-snap.143-T1
Valid prediction for Augustus_model.g22180.t1
Valid prediction for GlimmerHMM_glimmerT_33188-T1
Valid prediction for GlimmerHMM_glimmerT_33181-T1
Valid prediction for Augustus_model.g22160.t1
Valid prediction for GlimmerHMM_glimmerT_33198-T1
Valid prediction for snap_scaffold_14-snap.118-T1
Valid prediction for Augustus_model.g22167.t1
Valid prediction for snap_scaffold_14-snap.117-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_14-snap.132-T1
Valid prediction for GlimmerHMM_glimmerT_33180-T1
Valid prediction for snap_scaffold_14-snap.112-T1
Valid prediction for snap_scaffold_14-snap.114-T1
Valid prediction for GlimmerHMM_glimmerT_33182-T1
Valid prediction for snap_scaffold_14-snap.142-T1
Valid prediction for Augustus_model.g22166.t1
Valid prediction for snap_scaffold_14-snap.120-T1
Valid prediction for Augustus_model.g22158.t1
Valid prediction for GlimmerHMM_glimmerT_33185-T1
Valid prediction for Augustus_model.g22159.t1
Valid prediction for snap_scaffold_14-snap.113-T1
Valid prediction for snap_scaffold_14-snap.121-T1
Valid prediction for CodingQuarry_transcript_15529-T1
Valid prediction for snap_scaffold_14-snap.140-T1
Valid prediction for snap_scaffold_14-snap.122-T1
Valid prediction for GlimmerHMM_glimmerT_33193-T1
Valid prediction for Augustus_model.g22165.t1
Valid prediction for snap_scaffold_14-snap.144-T1
Valid prediction for GlimmerHMM_glimmerT_33187-T1
Valid prediction for snap_scaffold_14-snap.119-T1
Valid prediction for Augustus_model.g22172.t1
Valid prediction for Augustus_model.g22178.t1
Valid prediction for Augustus_model.g22171.t1
Valid prediction for snap_scaffold_14-snap.141-T1
Valid prediction for snap_scaffold_14-snap.131-T1
Valid prediction for Augustus_model.g22157.t1
Valid prediction for Augustus_model.g22168.t1
Valid prediction for snap_scaffold_14-snap.126-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 272148, rend_intergenic: 269571  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 375099
-exon list size: 293


building trellis

0.3    
0.7    
1.0    
1.4    
1.7    
2.0    
2.4    
2.7    
3.1    
3.4    
3.7    
4.1    
4.4    
4.7    
5.1    
5.4    
5.8    
6.1    
6.4    
6.8    
7.1    
7.5    
7.8    
8.1    
8.5    
8.8    
9.2    
9.5    
9.8    
10.2    
10.5    
10.8    
11.2    
11.5    
11.9    
12.2    
12.5    
12.9    
13.2    
13.6    
13.9    
14.2    
14.6    
14.9    
15.3    
15.6    
15.9    
16.3    
16.6    
16.9    
17.3    
17.6    
18.0    
18.3    
18.6    
19.0    
19.3    
19.7    
20.0    
20.3    
20.7    
21.0    
21.4    
21.7    
22.0    
22.4    
22.7    
23.1    
23.4    
23.7    
24.1    
24.4    
24.7    
25.1    
25.4    
25.8    
26.1    
26.4    
26.8    
27.1    
27.5    
27.8    
28.1    
28.5    
28.8    
29.2    
29.5    
29.8    
30.2    
30.5    
30.8    
31.2    
31.5    
31.9    
32.2    
32.5    
32.9    
33.2    
33.6    
33.9    
34.2    
34.6    
34.9    
35.3    
35.6    
35.9    
36.3    
36.6    
36.9    
37.3    
37.6    
38.0    
38.3    
38.6    
39.0    
39.3    
39.7    
40.0    
40.3    
40.7    
41.0    
41.4    
41.7    
42.0    
42.4    
42.7    
43.1    
43.4    
43.7    
44.1    
44.4    
44.7    
45.1    
45.4    
45.8    
46.1    
46.4    
46.8    
47.1    
47.5    
47.8    
48.1    
48.5    
48.8    
49.2    
49.5    
49.8    
50.2    
50.5    
50.8    
51.2    
51.5    
51.9    
52.2    
52.5    
52.9    
53.2    
53.6    
53.9    
54.2    
54.6    
54.9    
55.3    
55.6    
55.9    
56.3    
56.6    
56.9    
57.3    
57.6    
58.0    
58.3    
58.6    
59.0    
59.3    
59.7    
60.0    
60.3    
60.7    
61.0    
61.4    
61.7    
62.0    
62.4    
62.7    
63.1    
63.4    
63.7    
64.1    
64.4    
64.7    
65.1    
65.4    
65.8    
66.1    
66.4    
66.8    
67.1    
67.5    
67.8    
68.1    
68.5    
68.8    
69.2    
69.5    
69.8    
70.2    
70.5    
70.8    
71.2    
71.5    
71.9    
72.2    
72.5    
72.9    
73.2    
73.6    
73.9    
74.2    
74.6    
74.9    
75.3    
75.6    
75.9    
76.3    
76.6    
76.9    
77.3    
77.6    
78.0    
78.3    
78.6    
79.0    
79.3    
79.7    
80.0    
80.3    
80.7    
81.0    
81.4    
81.7    
82.0    
82.4    
82.7    
83.1    
83.4    
83.7    
84.1    
84.4    
84.7    
85.1    
85.4    
85.8    
86.1    
86.4    
86.8    
87.1    
87.5    
87.8    
88.1    
88.5    
88.8    
89.2    
89.5    
89.8    
90.2    
90.5    
90.8    
91.2    
91.5    
91.9    
92.2    
92.5    
92.9    
93.2    
93.6    
93.9    
94.2    
94.6    
94.9    
95.3    
95.6    
95.9    
96.3    
96.6    
96.9    
97.3    
97.6    
98.0    
98.3    
98.6    
99.0    
99.3    
99.7    
-found 38 predictions from path traversal
Error with prediction: snap lend_intergenic: 272148, rend_intergenic: 269571  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 31 predictions persist after filtering for low support