-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_14/scaffold_14_5277858-5371037

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_33816-T1
Valid prediction for snap_scaffold_14-snap.1059-T1
Valid prediction for snap_scaffold_14-snap.1065-T1
Valid prediction for snap_scaffold_14-snap.1051-T1
Valid prediction for Augustus_model.g22608.t1
Valid prediction for Augustus_model.g22606.t1
Valid prediction for GlimmerHMM_glimmerT_33822-T1
Valid prediction for GlimmerHMM_glimmerT_33819-T1
Valid prediction for GlimmerHMM_glimmerT_33824-T1
Valid prediction for snap_scaffold_14-snap.1069-T1
Valid prediction for Augustus_model.g22610.t1
Valid prediction for Augustus_model.g22603.t1
Valid prediction for GlimmerHMM_glimmerT_33820-T1
Valid prediction for GlimmerHMM_glimmerT_33830-T1
Valid prediction for Augustus_model.g22612.t1
Valid prediction for GlimmerHMM_glimmerT_33826-T1
Valid prediction for snap_scaffold_14-snap.1058-T1
Valid prediction for snap_scaffold_14-snap.1054-T1
Valid prediction for GlimmerHMM_glimmerT_33818-T1
Valid prediction for snap_scaffold_14-snap.1056-T1
Valid prediction for snap_scaffold_14-snap.1067-T1
Valid prediction for GlimmerHMM_glimmerT_33831-T1
Valid prediction for snap_scaffold_14-snap.1060-T1
Valid prediction for snap_scaffold_14-snap.1062-T1
Valid prediction for GlimmerHMM_glimmerT_33825-T1
Valid prediction for snap_scaffold_14-snap.1050-T1
Valid prediction for snap_scaffold_14-snap.1057-T1
Valid prediction for snap_scaffold_14-snap.1066-T1
Valid prediction for snap_scaffold_14-snap.1061-T1
Valid prediction for Augustus_model.g22607.t1
Valid prediction for snap_scaffold_14-snap.1052-T1
Valid prediction for Augustus_model.g22605.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 60839, 60963
Sorry, prediction pasa_asmbl_13077.p1 fails validation.
(ATG)	 AC	59312-59342	GT	AGG
(GTC)	 AG	59899-60041	GT	ATG
(TAC)	 AG	60205-60700	GT	AGG
(CAC)	 AG	60839-60963	GT	AGG
-recovered pasa_asmbl_13077.p1, initial, 59312, 59342
-recovered pasa_asmbl_13077.p1, internal, 59899, 60041
-recovered pasa_asmbl_13077.p1, internal, 60205, 60700
-recovered pasa_asmbl_13077.p1, internal, 60839, 60963
Valid prediction for GlimmerHMM_glimmerT_33815-T1
Valid prediction for GlimmerHMM_glimmerT_33821-T1
Valid prediction for Augustus_model.g22614.t1
Valid prediction for Augustus_model.g22604.t1
Valid prediction for GlimmerHMM_glimmerT_33817-T1
Valid prediction for snap_scaffold_14-snap.1048-T1
Valid prediction for snap_scaffold_14-snap.1068-T1
Valid prediction for snap_scaffold_14-snap.1053-T1
Valid prediction for GlimmerHMM_glimmerT_33827-T1
Valid prediction for snap_scaffold_14-snap.1070-T1
Valid prediction for Augustus_model.g22609.t1
Valid prediction for GlimmerHMM_glimmerT_33834-T1
Valid prediction for snap_scaffold_14-snap.1063-T1
Valid prediction for GlimmerHMM_glimmerT_33832-T1
Valid prediction for snap_scaffold_14-snap.1055-T1
Valid prediction for GlimmerHMM_glimmerT_33823-T1
Valid prediction for Augustus_model.g22613.t1
Valid prediction for GlimmerHMM_glimmerT_33833-T1
Valid prediction for Augustus_model.g22611.t1
Valid prediction for GlimmerHMM_glimmerT_33828-T1
Valid prediction for GlimmerHMM_glimmerT_33835-T1
Valid prediction for GlimmerHMM_glimmerT_33829-T1
Valid prediction for snap_scaffold_14-snap.1049-T1
Valid prediction for pasa_asmbl_13812.p1
Valid prediction for snap_scaffold_14-snap.1064-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 13783, rend_intergenic: 10172  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33063, rend_intergenic: 27857  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 93180
-exon list size: 155


building trellis

0.6    
1.3    
1.9    
2.5    
3.2    
3.8    
4.5    
5.1    
5.7    
6.4    
7.0    
7.6    
8.3    
8.9    
9.6    
10.2    
10.8    
11.5    
12.1    
12.7    
13.4    
14.0    
14.6    
15.3    
15.9    
16.6    
17.2    
17.8    
18.5    
19.1    
19.7    
20.4    
21.0    
21.7    
22.3    
22.9    
23.6    
24.2    
24.8    
25.5    
26.1    
26.8    
27.4    
28.0    
28.7    
29.3    
29.9    
30.6    
31.2    
31.8    
32.5    
33.1    
33.8    
34.4    
35.0    
35.7    
36.3    
36.9    
37.6    
38.2    
38.9    
39.5    
40.1    
40.8    
41.4    
42.0    
42.7    
43.3    
43.9    
44.6    
45.2    
45.9    
46.5    
47.1    
47.8    
48.4    
49.0    
49.7    
50.3    
51.0    
51.6    
52.2    
52.9    
53.5    
54.1    
54.8    
55.4    
56.1    
56.7    
57.3    
58.0    
58.6    
59.2    
59.9    
60.5    
61.1    
61.8    
62.4    
63.1    
63.7    
64.3    
65.0    
65.6    
66.2    
66.9    
67.5    
68.2    
68.8    
69.4    
70.1    
70.7    
71.3    
72.0    
72.6    
73.2    
73.9    
74.5    
75.2    
75.8    
76.4    
77.1    
77.7    
78.3    
79.0    
79.6    
80.3    
80.9    
81.5    
82.2    
82.8    
83.4    
84.1    
84.7    
85.4    
86.0    
86.6    
87.3    
87.9    
88.5    
89.2    
89.8    
90.4    
91.1    
91.7    
92.4    
93.0    
93.6    
94.3    
94.9    
95.5    
96.2    
96.8    
97.5    
98.1    
98.7    
99.4    
-found 21 predictions from path traversal
Error with prediction: snap lend_intergenic: 13783, rend_intergenic: 10172  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33063, rend_intergenic: 27857  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 17 predictions persist after filtering for low support