-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_14/scaffold_14_5146773-5280618

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 15399, 15629
Sorry, prediction pasa_asmbl_12006.p1 fails validation.
(ATG)	 AG	15126-15203	GT	GCG
(GTC)	 AG	15399-15629	AC	GTA
-recovered pasa_asmbl_12006.p1, initial, 15126, 15203
-recovered pasa_asmbl_12006.p1, internal, 15126, 15203
Valid prediction for GlimmerHMM_glimmerT_33801-T1
Valid prediction for GlimmerHMM_glimmerT_33803-T1
Valid prediction for snap_scaffold_14-snap.1027-T1
Valid prediction for GlimmerHMM_glimmerT_33798-T1
Valid prediction for snap_scaffold_14-snap.1020-T1
Valid prediction for snap_scaffold_14-snap.1033-T1
Valid prediction for pasa_asmbl_12008.p1
Valid prediction for GlimmerHMM_glimmerT_33800-T1
Valid prediction for snap_scaffold_14-snap.1029-T1
Valid prediction for snap_scaffold_14-snap.1013-T1
Valid prediction for snap_scaffold_14-snap.1015-T1
Valid prediction for Augustus_model.g22587.t1
Valid prediction for GlimmerHMM_glimmerT_33813-T1
Valid prediction for Augustus_model.g22596.t1
Valid prediction for GlimmerHMM_glimmerT_33810-T1
Valid prediction for Augustus_model.g22588.t1
Valid prediction for snap_scaffold_14-snap.1031-T1
Couldn't classify 4297, 4395
Couldn't classify 5921, 5984
Sorry, prediction pasa_asmbl_12718.p1 fails validation.
(GAG)	 GT	4297-4395	GT	AGG
(ACC)	 AG	5575-5729	GT	AGG
(ACT)	 AG	5921-5984	GC	AGG
-recovered pasa_asmbl_12718.p1, internal, 5575, 5729
-recovered pasa_asmbl_12718.p1, internal, 5921, 5984
Valid prediction for snap_scaffold_14-snap.1040-T1
Valid prediction for GlimmerHMM_glimmerT_33790-T1
Valid prediction for snap_scaffold_14-snap.1037-T1
Valid prediction for GlimmerHMM_glimmerT_33795-T1
Valid prediction for snap_scaffold_14-snap.1010-T1
Valid prediction for GlimmerHMM_glimmerT_33794-T1
Valid prediction for snap_scaffold_14-snap.1025-T1
Valid prediction for Augustus_model.g22584.t1
Valid prediction for snap_scaffold_14-snap.1045-T1
Valid prediction for GlimmerHMM_glimmerT_33792-T1
Valid prediction for snap_scaffold_14-snap.1028-T1
Valid prediction for Augustus_model.g22597.t1
Valid prediction for snap_scaffold_14-snap.1046-T1
Valid prediction for snap_scaffold_14-snap.1026-T1
Valid prediction for snap_scaffold_14-snap.1023-T1
Valid prediction for Augustus_model.g22594.t1
Valid prediction for snap_scaffold_14-snap.1016-T1
Valid prediction for snap_scaffold_14-snap.1012-T1
Valid prediction for GlimmerHMM_glimmerT_33793-T1
Valid prediction for GlimmerHMM_glimmerT_33805-T1
Valid prediction for snap_scaffold_14-snap.1035-T1
Valid prediction for snap_scaffold_14-snap.1011-T1
Valid prediction for snap_scaffold_14-snap.1042-T1
Valid prediction for GlimmerHMM_glimmerT_33804-T1
Valid prediction for snap_scaffold_14-snap.1021-T1
Valid prediction for Augustus_model.g22599.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g22590.t1
Valid prediction for snap_scaffold_14-snap.1030-T1
Valid prediction for Augustus_model.g22602.t1
Valid prediction for snap_scaffold_14-snap.1044-T1
Valid prediction for Augustus_model.g22593.t1
Valid prediction for snap_scaffold_14-snap.1039-T1
Valid prediction for GlimmerHMM_glimmerT_33799-T1
Valid prediction for snap_scaffold_14-snap.1034-T1
Valid prediction for Augustus_model.g22589.t1
Valid prediction for Augustus_model.g22592.t1
Valid prediction for snap_scaffold_14-snap.1036-T1
Valid prediction for GlimmerHMM_glimmerT_33814-T1
Valid prediction for snap_scaffold_14-snap.1014-T1
Valid prediction for snap_scaffold_14-snap.1024-T1
Valid prediction for snap_scaffold_14-snap.1038-T1
Valid prediction for Augustus_model.g22598.t1
Valid prediction for Augustus_model.g22591.t1
Valid prediction for GlimmerHMM_glimmerT_33791-T1
Valid prediction for GlimmerHMM_glimmerT_33808-T1
Valid prediction for GlimmerHMM_glimmerT_33811-T1
Valid prediction for GlimmerHMM_glimmerT_33806-T1
Valid prediction for GlimmerHMM_glimmerT_33807-T1
Valid prediction for snap_scaffold_14-snap.1019-T1
Valid prediction for GlimmerHMM_glimmerT_33797-T1
Valid prediction for snap_scaffold_14-snap.1017-T1
Valid prediction for snap_scaffold_14-snap.1018-T1
Valid prediction for GlimmerHMM_glimmerT_33802-T1
Valid prediction for Augustus_model.g22585.t1
Valid prediction for snap_scaffold_14-snap.1022-T1
Valid prediction for Augustus_model.g22586.t1
Valid prediction for Augustus_model.g22601.t1
Valid prediction for snap_scaffold_14-snap.1032-T1
Valid prediction for Augustus_model.g22600.t1
Valid prediction for GlimmerHMM_glimmerT_33809-T1
Valid prediction for GlimmerHMM_glimmerT_33796-T1
Valid prediction for Augustus_model.g22595.t1
Valid prediction for snap_scaffold_14-snap.1047-T1
Valid prediction for GlimmerHMM_glimmerT_33812-T1
Valid prediction for snap_scaffold_14-snap.1043-T1
Valid prediction for snap_scaffold_14-snap.1041-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 29895, rend_intergenic: 22436  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44178, rend_intergenic: 38584  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46129, rend_intergenic: 45069  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56179, rend_intergenic: 47613  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76394, rend_intergenic: 75353  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82343, rend_intergenic: 76562  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87816, rend_intergenic: 84062  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94507, rend_intergenic: 90331  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105376, rend_intergenic: 98154  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108986, rend_intergenic: 105545  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116966, rend_intergenic: 116154  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119800, rend_intergenic: 117025  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124554, rend_intergenic: 119800  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 133846
-exon list size: 286


building trellis

0.3    
0.7    
1.0    
1.4    
1.7    
2.1    
2.4    
2.8    
3.1    
3.5    
3.8    
4.2    
4.5    
4.9    
5.2    
5.6    
5.9    
6.2    
6.6    
6.9    
7.3    
7.6    
8.0    
8.3    
8.7    
9.0    
9.4    
9.7    
10.1    
10.4    
10.8    
11.1    
11.5    
11.8    
12.2    
12.5    
12.8    
13.2    
13.5    
13.9    
14.2    
14.6    
14.9    
15.3    
15.6    
16.0    
16.3    
16.7    
17.0    
17.4    
17.7    
18.1    
18.4    
18.8    
19.1    
19.4    
19.8    
20.1    
20.5    
20.8    
21.2    
21.5    
21.9    
22.2    
22.6    
22.9    
23.3    
23.6    
24.0    
24.3    
24.7    
25.0    
25.3    
25.7    
26.0    
26.4    
26.7    
27.1    
27.4    
27.8    
28.1    
28.5    
28.8    
29.2    
29.5    
29.9    
30.2    
30.6    
30.9    
31.2    
31.6    
31.9    
32.3    
32.6    
33.0    
33.3    
33.7    
34.0    
34.4    
34.7    
35.1    
35.4    
35.8    
36.1    
36.5    
36.8    
37.2    
37.5    
37.8    
38.2    
38.5    
38.9    
39.2    
39.6    
39.9    
40.3    
40.6    
41.0    
41.3    
41.7    
42.0    
42.4    
42.7    
43.1    
43.4    
43.8    
44.1    
44.4    
44.8    
45.1    
45.5    
45.8    
46.2    
46.5    
46.9    
47.2    
47.6    
47.9    
48.3    
48.6    
49.0    
49.3    
49.7    
50.0    
50.3    
50.7    
51.0    
51.4    
51.7    
52.1    
52.4    
52.8    
53.1    
53.5    
53.8    
54.2    
54.5    
54.9    
55.2    
55.6    
55.9    
56.2    
56.6    
56.9    
57.3    
57.6    
58.0    
58.3    
58.7    
59.0    
59.4    
59.7    
60.1    
60.4    
60.8    
61.1    
61.5    
61.8    
62.2    
62.5    
62.8    
63.2    
63.5    
63.9    
64.2    
64.6    
64.9    
65.3    
65.6    
66.0    
66.3    
66.7    
67.0    
67.4    
67.7    
68.1    
68.4    
68.8    
69.1    
69.4    
69.8    
70.1    
70.5    
70.8    
71.2    
71.5    
71.9    
72.2    
72.6    
72.9    
73.3    
73.6    
74.0    
74.3    
74.7    
75.0    
75.3    
75.7    
76.0    
76.4    
76.7    
77.1    
77.4    
77.8    
78.1    
78.5    
78.8    
79.2    
79.5    
79.9    
80.2    
80.6    
80.9    
81.2    
81.6    
81.9    
82.3    
82.6    
83.0    
83.3    
83.7    
84.0    
84.4    
84.7    
85.1    
85.4    
85.8    
86.1    
86.5    
86.8    
87.2    
87.5    
87.8    
88.2    
88.5    
88.9    
89.2    
89.6    
89.9    
90.3    
90.6    
91.0    
91.3    
91.7    
92.0    
92.4    
92.7    
93.1    
93.4    
93.8    
94.1    
94.4    
94.8    
95.1    
95.5    
95.8    
96.2    
96.5    
96.9    
97.2    
97.6    
97.9    
98.3    
98.6    
99.0    
99.3    
99.7    
-found 31 predictions from path traversal
Error with prediction: snap lend_intergenic: 29895, rend_intergenic: 22436  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44178, rend_intergenic: 38584  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46129, rend_intergenic: 45069  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56179, rend_intergenic: 47613  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76394, rend_intergenic: 75353  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82343, rend_intergenic: 76562  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87816, rend_intergenic: 84062  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94507, rend_intergenic: 90331  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105376, rend_intergenic: 98154  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108986, rend_intergenic: 105545  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116966, rend_intergenic: 116154  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119800, rend_intergenic: 117025  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124554, rend_intergenic: 119800  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 17 predictions persist after filtering for low support