-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_14/scaffold_14_4955250-5149015

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_33774-T1
Valid prediction for GlimmerHMM_glimmerT_33782-T1
Valid prediction for GlimmerHMM_glimmerT_33779-T1
Valid prediction for GlimmerHMM_glimmerT_33789-T1
Valid prediction for snap_scaffold_14-snap.992-T1
Valid prediction for snap_scaffold_14-snap.1003-T1
Valid prediction for Augustus_model.g22572.t1
Valid prediction for GlimmerHMM_glimmerT_33786-T1
Valid prediction for snap_scaffold_14-snap.985-T1
Valid prediction for GlimmerHMM_glimmerT_33780-T1
Valid prediction for snap_scaffold_14-snap.1006-T1
Valid prediction for Augustus_model.g22582.t1
Valid prediction for snap_scaffold_14-snap.1002-T1
Valid prediction for snap_scaffold_14-snap.1008-T1
Valid prediction for Augustus_model.g22581.t1
Valid prediction for snap_scaffold_14-snap.988-T1
Valid prediction for snap_scaffold_14-snap.982-T1
Valid prediction for snap_scaffold_14-snap.1009-T1
Valid prediction for GlimmerHMM_glimmerT_33783-T1
Valid prediction for GlimmerHMM_glimmerT_33767-T1
Valid prediction for snap_scaffold_14-snap.996-T1
Valid prediction for Augustus_model.g22575.t1
Valid prediction for snap_scaffold_14-snap.977-T1
Couldn't classify 163795, 164454
Couldn't classify 164755, 164805
Sorry, prediction CodingQuarry_transcript_15636-T1 fails validation.
(ATG)	 TC	163795-164454	GA	ACG
(AGA)	 AT	164755-164805	CA	AGC
Valid prediction for snap_scaffold_14-snap.974-T1
Valid prediction for snap_scaffold_14-snap.998-T1
Valid prediction for snap_scaffold_14-snap.1004-T1
Valid prediction for GlimmerHMM_glimmerT_33784-T1
Valid prediction for GlimmerHMM_glimmerT_33773-T1
Valid prediction for snap_scaffold_14-snap.968-T1
Valid prediction for snap_scaffold_14-snap.995-T1
Valid prediction for snap_scaffold_14-snap.989-T1
Valid prediction for Augustus_model.g22576.t1
Valid prediction for snap_scaffold_14-snap.1000-T1
Valid prediction for Augustus_model.g22573.t1
Valid prediction for GlimmerHMM_glimmerT_33785-T1
Valid prediction for snap_scaffold_14-snap.971-T1
Valid prediction for Augustus_model.g22578.t1
Valid prediction for Augustus_model.g22579.t1
Valid prediction for snap_scaffold_14-snap.983-T1
Valid prediction for Augustus_model.g22580.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_33769-T1
Valid prediction for GlimmerHMM_glimmerT_33770-T1
Valid prediction for GlimmerHMM_glimmerT_33776-T1
Valid prediction for snap_scaffold_14-snap.979-T1
Valid prediction for Augustus_model.g22571.t1
Valid prediction for GlimmerHMM_glimmerT_33777-T1
Valid prediction for Augustus_model.g22574.t1
Valid prediction for snap_scaffold_14-snap.970-T1
Valid prediction for snap_scaffold_14-snap.1001-T1
Valid prediction for snap_scaffold_14-snap.980-T1
Valid prediction for snap_scaffold_14-snap.1005-T1
Valid prediction for snap_scaffold_14-snap.997-T1
Valid prediction for GlimmerHMM_glimmerT_33778-T1
Valid prediction for snap_scaffold_14-snap.978-T1
Valid prediction for Augustus_model.g22583.t1
Valid prediction for GlimmerHMM_glimmerT_33781-T1
Valid prediction for snap_scaffold_14-snap.984-T1
Valid prediction for snap_scaffold_14-snap.994-T1
Valid prediction for GlimmerHMM_glimmerT_33772-T1
Valid prediction for GlimmerHMM_glimmerT_33766-T1
Valid prediction for GlimmerHMM_glimmerT_33775-T1
Valid prediction for snap_scaffold_14-snap.986-T1
Valid prediction for snap_scaffold_14-snap.991-T1
Valid prediction for snap_scaffold_14-snap.973-T1
Valid prediction for snap_scaffold_14-snap.993-T1
Valid prediction for GlimmerHMM_glimmerT_33771-T1
Valid prediction for snap_scaffold_14-snap.990-T1
Valid prediction for snap_scaffold_14-snap.969-T1
Valid prediction for GlimmerHMM_glimmerT_33765-T1
Valid prediction for snap_scaffold_14-snap.976-T1
Valid prediction for snap_scaffold_14-snap.981-T1
Valid prediction for GlimmerHMM_glimmerT_33768-T1
Valid prediction for snap_scaffold_14-snap.999-T1
Valid prediction for GlimmerHMM_glimmerT_33788-T1
Valid prediction for Augustus_model.g22577.t1
Valid prediction for snap_scaffold_14-snap.987-T1
Valid prediction for snap_scaffold_14-snap.972-T1
Valid prediction for GlimmerHMM_glimmerT_33787-T1
Valid prediction for snap_scaffold_14-snap.975-T1
Valid prediction for snap_scaffold_14-snap.1007-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 15763, rend_intergenic: 9189  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26804, rend_intergenic: 20685  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38863, rend_intergenic: 30268  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50497, rend_intergenic: 40547  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71731, rend_intergenic: 50501  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88363, rend_intergenic: 72305  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91888, rend_intergenic: 89298  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98507, rend_intergenic: 95192  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104490, rend_intergenic: 98614  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109013, rend_intergenic: 105180  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114819, rend_intergenic: 110665  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120922, rend_intergenic: 116733  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123187, rend_intergenic: 121096  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132762, rend_intergenic: 126723  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135979, rend_intergenic: 133626  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139428, rend_intergenic: 136768  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 158851, rend_intergenic: 154761  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 190004, rend_intergenic: 178614  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 193766
-exon list size: 361


building trellis

0.3    
0.6    
0.8    
1.1    
1.4    
1.7    
1.9    
2.2    
2.5    
2.8    
3.0    
3.3    
3.6    
3.9    
4.1    
4.4    
4.7    
5.0    
5.2    
5.5    
5.8    
6.1    
6.3    
6.6    
6.9    
7.2    
7.4    
7.7    
8.0    
8.3    
8.5    
8.8    
9.1    
9.4    
9.6    
9.9    
10.2    
10.5    
10.7    
11.0    
11.3    
11.6    
11.8    
12.1    
12.4    
12.7    
12.9    
13.2    
13.5    
13.8    
14.0    
14.3    
14.6    
14.9    
15.2    
15.4    
15.7    
16.0    
16.3    
16.5    
16.8    
17.1    
17.4    
17.6    
17.9    
18.2    
18.5    
18.7    
19.0    
19.3    
19.6    
19.8    
20.1    
20.4    
20.7    
20.9    
21.2    
21.5    
21.8    
22.0    
22.3    
22.6    
22.9    
23.1    
23.4    
23.7    
24.0    
24.2    
24.5    
24.8    
25.1    
25.3    
25.6    
25.9    
26.2    
26.4    
26.7    
27.0    
27.3    
27.5    
27.8    
28.1    
28.4    
28.7    
28.9    
29.2    
29.5    
29.8    
30.0    
30.3    
30.6    
30.9    
31.1    
31.4    
31.7    
32.0    
32.2    
32.5    
32.8    
33.1    
33.3    
33.6    
33.9    
34.2    
34.4    
34.7    
35.0    
35.3    
35.5    
35.8    
36.1    
36.4    
36.6    
36.9    
37.2    
37.5    
37.7    
38.0    
38.3    
38.6    
38.8    
39.1    
39.4    
39.7    
39.9    
40.2    
40.5    
40.8    
41.0    
41.3    
41.6    
41.9    
42.1    
42.4    
42.7    
43.0    
43.3    
43.5    
43.8    
44.1    
44.4    
44.6    
44.9    
45.2    
45.5    
45.7    
46.0    
46.3    
46.6    
46.8    
47.1    
47.4    
47.7    
47.9    
48.2    
48.5    
48.8    
49.0    
49.3    
49.6    
49.9    
50.1    
50.4    
50.7    
51.0    
51.2    
51.5    
51.8    
52.1    
52.3    
52.6    
52.9    
53.2    
53.4    
53.7    
54.0    
54.3    
54.5    
54.8    
55.1    
55.4    
55.6    
55.9    
56.2    
56.5    
56.7    
57.0    
57.3    
57.6    
57.9    
58.1    
58.4    
58.7    
59.0    
59.2    
59.5    
59.8    
60.1    
60.3    
60.6    
60.9    
61.2    
61.4    
61.7    
62.0    
62.3    
62.5    
62.8    
63.1    
63.4    
63.6    
63.9    
64.2    
64.5    
64.7    
65.0    
65.3    
65.6    
65.8    
66.1    
66.4    
66.7    
66.9    
67.2    
67.5    
67.8    
68.0    
68.3    
68.6    
68.9    
69.1    
69.4    
69.7    
70.0    
70.2    
70.5    
70.8    
71.1    
71.3    
71.6    
71.9    
72.2    
72.5    
72.7    
73.0    
73.3    
73.6    
73.8    
74.1    
74.4    
74.7    
74.9    
75.2    
75.5    
75.8    
76.0    
76.3    
76.6    
76.9    
77.1    
77.4    
77.7    
78.0    
78.2    
78.5    
78.8    
79.1    
79.3    
79.6    
79.9    
80.2    
80.4    
80.7    
81.0    
81.3    
81.5    
81.8    
82.1    
82.4    
82.6    
82.9    
83.2    
83.5    
83.7    
84.0    
84.3    
84.6    
84.8    
85.1    
85.4    
85.7    
86.0    
86.2    
86.5    
86.8    
87.1    
87.3    
87.6    
87.9    
88.2    
88.4    
88.7    
89.0    
89.3    
89.5    
89.8    
90.1    
90.4    
90.6    
90.9    
91.2    
91.5    
91.7    
92.0    
92.3    
92.6    
92.8    
93.1    
93.4    
93.7    
93.9    
94.2    
94.5    
94.8    
95.0    
95.3    
95.6    
95.9    
96.1    
96.4    
96.7    
97.0    
97.2    
97.5    
97.8    
98.1    
98.3    
98.6    
98.9    
99.2    
99.4    
99.7    
-found 24 predictions from path traversal
Error with prediction: snap lend_intergenic: 15763, rend_intergenic: 9189  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26804, rend_intergenic: 20685  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38863, rend_intergenic: 30268  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50497, rend_intergenic: 40547  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71731, rend_intergenic: 50501  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88363, rend_intergenic: 72305  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91888, rend_intergenic: 89298  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98507, rend_intergenic: 95192  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104490, rend_intergenic: 98614  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109013, rend_intergenic: 105180  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114819, rend_intergenic: 110665  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120922, rend_intergenic: 116733  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123187, rend_intergenic: 121096  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132762, rend_intergenic: 126723  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135979, rend_intergenic: 133626  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139428, rend_intergenic: 136768  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 158851, rend_intergenic: 154761  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 190004, rend_intergenic: 178614  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 13 predictions persist after filtering for low support