-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_14/scaffold_14_4815500-4958203

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_14-snap.927-T1
Valid prediction for snap_scaffold_14-snap.953-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_33743-T1
Valid prediction for GlimmerHMM_glimmerT_33764-T1
Valid prediction for GlimmerHMM_glimmerT_33755-T1
Valid prediction for snap_scaffold_14-snap.943-T1
Valid prediction for snap_scaffold_14-snap.952-T1
Valid prediction for GlimmerHMM_glimmerT_33749-T1
Valid prediction for snap_scaffold_14-snap.949-T1
Valid prediction for GlimmerHMM_glimmerT_33753-T1
Valid prediction for snap_scaffold_14-snap.946-T1
Valid prediction for Augustus_model.g22553.t1
Valid prediction for snap_scaffold_14-snap.938-T1
Valid prediction for Augustus_model.g22570.t1
Valid prediction for GlimmerHMM_glimmerT_33761-T1
Valid prediction for snap_scaffold_14-snap.934-T1
Valid prediction for snap_scaffold_14-snap.957-T1
Valid prediction for snap_scaffold_14-snap.963-T1
Valid prediction for GlimmerHMM_glimmerT_33740-T1
Valid prediction for Augustus_model.g22569.t1
Valid prediction for snap_scaffold_14-snap.960-T1
Valid prediction for snap_scaffold_14-snap.951-T1
Valid prediction for GlimmerHMM_glimmerT_33754-T1
Valid prediction for GlimmerHMM_glimmerT_33759-T1
Valid prediction for GlimmerHMM_glimmerT_33750-T1
Valid prediction for snap_scaffold_14-snap.940-T1
Valid prediction for Augustus_model.g22566.t1
Valid prediction for snap_scaffold_14-snap.958-T1
Valid prediction for snap_scaffold_14-snap.965-T1
Valid prediction for snap_scaffold_14-snap.939-T1
Valid prediction for snap_scaffold_14-snap.956-T1
Valid prediction for Augustus_model.g22559.t1
Valid prediction for snap_scaffold_14-snap.936-T1
Valid prediction for snap_scaffold_14-snap.931-T1
Valid prediction for Augustus_model.g22557.t1
Valid prediction for GlimmerHMM_glimmerT_33763-T1
Valid prediction for Augustus_model.g22556.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_33747-T1
Valid prediction for GlimmerHMM_glimmerT_33738-T1
Valid prediction for snap_scaffold_14-snap.954-T1
Valid prediction for snap_scaffold_14-snap.933-T1
Valid prediction for snap_scaffold_14-snap.941-T1
Valid prediction for snap_scaffold_14-snap.930-T1
Valid prediction for GlimmerHMM_glimmerT_33741-T1
Valid prediction for snap_scaffold_14-snap.950-T1
Valid prediction for snap_scaffold_14-snap.947-T1
Valid prediction for GlimmerHMM_glimmerT_33742-T1
Valid prediction for Augustus_model.g22567.t1
Valid prediction for snap_scaffold_14-snap.928-T1
Valid prediction for GlimmerHMM_glimmerT_33746-T1
Valid prediction for Augustus_model.g22564.t1
Valid prediction for GlimmerHMM_glimmerT_33739-T1
Valid prediction for snap_scaffold_14-snap.962-T1
Valid prediction for Augustus_model.g22568.t1
Valid prediction for Augustus_model.g22561.t1
Valid prediction for snap_scaffold_14-snap.966-T1
Valid prediction for Augustus_model.g22565.t1
Valid prediction for Augustus_model.g22560.t1
Valid prediction for GlimmerHMM_glimmerT_33756-T1
Valid prediction for Augustus_model.g22558.t1
Valid prediction for snap_scaffold_14-snap.961-T1
Valid prediction for GlimmerHMM_glimmerT_33758-T1
Valid prediction for GlimmerHMM_glimmerT_33760-T1
Valid prediction for snap_scaffold_14-snap.929-T1
Valid prediction for snap_scaffold_14-snap.948-T1
Valid prediction for snap_scaffold_14-snap.935-T1
Valid prediction for GlimmerHMM_glimmerT_33762-T1
Valid prediction for Augustus_model.g22555.t1
Valid prediction for snap_scaffold_14-snap.959-T1
Valid prediction for snap_scaffold_14-snap.944-T1
Valid prediction for Augustus_model.g22562.t1
Valid prediction for GlimmerHMM_glimmerT_33757-T1
Valid prediction for GlimmerHMM_glimmerT_33745-T1
Valid prediction for GlimmerHMM_glimmerT_33748-T1
Valid prediction for Augustus_model.g22563.t1
Valid prediction for snap_scaffold_14-snap.945-T1
Valid prediction for GlimmerHMM_glimmerT_33752-T1
Valid prediction for Augustus_model.g22554.t1
Valid prediction for snap_scaffold_14-snap.955-T1
Valid prediction for GlimmerHMM_glimmerT_33751-T1
Valid prediction for GlimmerHMM_glimmerT_33744-T1
Valid prediction for snap_scaffold_14-snap.942-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_14-snap.932-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for snap_scaffold_14-snap.937-T1
Valid prediction for snap_scaffold_14-snap.967-T1
Valid prediction for snap_scaffold_14-snap.964-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 19021, rend_intergenic: 12428  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21863, rend_intergenic: 20917  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 31833, rend_intergenic: 27097  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56103, rend_intergenic: 53930  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58921, rend_intergenic: 56730  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83536, rend_intergenic: 77616  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103414, rend_intergenic: 95807  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122526, rend_intergenic: 118395  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 142704
-exon list size: 254


building trellis

0.4    
0.8    
1.2    
1.6    
2.0    
2.3    
2.7    
3.1    
3.5    
3.9    
4.3    
4.7    
5.1    
5.5    
5.9    
6.2    
6.6    
7.0    
7.4    
7.8    
8.2    
8.6    
9.0    
9.4    
9.8    
10.2    
10.5    
10.9    
11.3    
11.7    
12.1    
12.5    
12.9    
13.3    
13.7    
14.1    
14.5    
14.8    
15.2    
15.6    
16.0    
16.4    
16.8    
17.2    
17.6    
18.0    
18.4    
18.8    
19.1    
19.5    
19.9    
20.3    
20.7    
21.1    
21.5    
21.9    
22.3    
22.7    
23.0    
23.4    
23.8    
24.2    
24.6    
25.0    
25.4    
25.8    
26.2    
26.6    
27.0    
27.3    
27.7    
28.1    
28.5    
28.9    
29.3    
29.7    
30.1    
30.5    
30.9    
31.2    
31.6    
32.0    
32.4    
32.8    
33.2    
33.6    
34.0    
34.4    
34.8    
35.2    
35.5    
35.9    
36.3    
36.7    
37.1    
37.5    
37.9    
38.3    
38.7    
39.1    
39.5    
39.8    
40.2    
40.6    
41.0    
41.4    
41.8    
42.2    
42.6    
43.0    
43.4    
43.8    
44.1    
44.5    
44.9    
45.3    
45.7    
46.1    
46.5    
46.9    
47.3    
47.7    
48.0    
48.4    
48.8    
49.2    
49.6    
50.0    
50.4    
50.8    
51.2    
51.6    
52.0    
52.3    
52.7    
53.1    
53.5    
53.9    
54.3    
54.7    
55.1    
55.5    
55.9    
56.2    
56.6    
57.0    
57.4    
57.8    
58.2    
58.6    
59.0    
59.4    
59.8    
60.2    
60.5    
60.9    
61.3    
61.7    
62.1    
62.5    
62.9    
63.3    
63.7    
64.1    
64.5    
64.8    
65.2    
65.6    
66.0    
66.4    
66.8    
67.2    
67.6    
68.0    
68.4    
68.8    
69.1    
69.5    
69.9    
70.3    
70.7    
71.1    
71.5    
71.9    
72.3    
72.7    
73.0    
73.4    
73.8    
74.2    
74.6    
75.0    
75.4    
75.8    
76.2    
76.6    
77.0    
77.3    
77.7    
78.1    
78.5    
78.9    
79.3    
79.7    
80.1    
80.5    
80.9    
81.2    
81.6    
82.0    
82.4    
82.8    
83.2    
83.6    
84.0    
84.4    
84.8    
85.2    
85.5    
85.9    
86.3    
86.7    
87.1    
87.5    
87.9    
88.3    
88.7    
89.1    
89.5    
89.8    
90.2    
90.6    
91.0    
91.4    
91.8    
92.2    
92.6    
93.0    
93.4    
93.8    
94.1    
94.5    
94.9    
95.3    
95.7    
96.1    
96.5    
96.9    
97.3    
97.7    
98.0    
98.4    
98.8    
99.2    
99.6    
-found 28 predictions from path traversal
Error with prediction: snap lend_intergenic: 19021, rend_intergenic: 12428  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21863, rend_intergenic: 20917  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 31833, rend_intergenic: 27097  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56103, rend_intergenic: 53930  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58921, rend_intergenic: 56730  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83536, rend_intergenic: 77616  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103414, rend_intergenic: 95807  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122526, rend_intergenic: 118395  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 21 predictions persist after filtering for low support