-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_14/scaffold_14_4677416-4817299

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_14-snap.920-T1
Valid prediction for snap_scaffold_14-snap.903-T1
Valid prediction for snap_scaffold_14-snap.898-T1
Valid prediction for snap_scaffold_14-snap.922-T1
Valid prediction for Augustus_model.g22552.t1
Valid prediction for snap_scaffold_14-snap.902-T1
Valid prediction for GlimmerHMM_glimmerT_33727-T1
Valid prediction for Augustus_model.g22550.t1
Valid prediction for snap_scaffold_14-snap.918-T1
Valid prediction for GlimmerHMM_glimmerT_33730-T1
Valid prediction for snap_scaffold_14-snap.907-T1
Valid prediction for snap_scaffold_14-snap.901-T1
Valid prediction for GlimmerHMM_glimmerT_33737-T1
Valid prediction for GlimmerHMM_glimmerT_33721-T1
Valid prediction for snap_scaffold_14-snap.899-T1
Valid prediction for Augustus_model.g22548.t1
Valid prediction for Augustus_model.g22546.t1
Valid prediction for snap_scaffold_14-snap.915-T1
Valid prediction for snap_scaffold_14-snap.925-T1
Valid prediction for snap_scaffold_14-snap.913-T1
Valid prediction for snap_scaffold_14-snap.923-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_33736-T1
Valid prediction for snap_scaffold_14-snap.919-T1
Valid prediction for GlimmerHMM_glimmerT_33733-T1
Valid prediction for GlimmerHMM_glimmerT_33735-T1
Valid prediction for GlimmerHMM_glimmerT_33731-T1
Valid prediction for Augustus_model.g22547.t1
Valid prediction for Augustus_model.g22545.t1
Couldn't classify 112149, 112177
Sorry, prediction pasa_asmbl_13068.p2 fails validation.
(ATG)	 CC	111094-111258	GT	TGG
(GCT)	 AG	111449-111638	GT	AGG
(CTC)	 AG	111920-112039	GT	AGG
(ACG)	 AG	112149-112177	GC	TGG
-recovered pasa_asmbl_13068.p2, initial, 111094, 111258
-recovered pasa_asmbl_13068.p2, internal, 111449, 111638
-recovered pasa_asmbl_13068.p2, internal, 111920, 112039
-recovered pasa_asmbl_13068.p2, internal, 112149, 112177
Valid prediction for GlimmerHMM_glimmerT_33726-T1
Valid prediction for Augustus_model.g22536.t1
Valid prediction for snap_scaffold_14-snap.908-T1
Valid prediction for GlimmerHMM_glimmerT_33718-T1
Valid prediction for snap_scaffold_14-snap.897-T1
Couldn't classify 112691, 112871
Sorry, prediction pasa_asmbl_13066.p1 fails validation.
(TCT)	 GG	112691-112871	GT	GGG
(ACG)	 AG	113243-113393	GT	AGG
(GGA)	 AG	114643-114832	AC	AGA
-recovered pasa_asmbl_13066.p1, terminal, 114643, 114832
-recovered pasa_asmbl_13066.p1, internal, 113243, 113393
Valid prediction for GlimmerHMM_glimmerT_33722-T1
Valid prediction for GlimmerHMM_glimmerT_33729-T1
Valid prediction for snap_scaffold_14-snap.917-T1
Valid prediction for snap_scaffold_14-snap.906-T1
Valid prediction for CodingQuarry_transcript_15634-T1
Valid prediction for Augustus_model.g22540.t1
Valid prediction for snap_scaffold_14-snap.924-T1
Valid prediction for GlimmerHMM_glimmerT_33720-T1
Valid prediction for Augustus_model.g22543.t1
Valid prediction for Augustus_model.g22551.t1
Valid prediction for GlimmerHMM_glimmerT_33716-T1
Valid prediction for snap_scaffold_14-snap.921-T1
Valid prediction for Augustus_model.g22541.t1
Valid prediction for GlimmerHMM_glimmerT_33719-T1
Valid prediction for HiQ_model.g22549.t1
Valid prediction for snap_scaffold_14-snap.914-T1
Valid prediction for Augustus_model.g22544.t1
Valid prediction for snap_scaffold_14-snap.926-T1
Valid prediction for snap_scaffold_14-snap.916-T1
Valid prediction for Augustus_model.g22539.t1
Valid prediction for GlimmerHMM_glimmerT_33728-T1
Valid prediction for snap_scaffold_14-snap.910-T1
Valid prediction for GlimmerHMM_glimmerT_33717-T1
Valid prediction for Augustus_model.g22542.t1
Valid prediction for snap_scaffold_14-snap.909-T1
Valid prediction for GlimmerHMM_glimmerT_33724-T1
Valid prediction for GlimmerHMM_glimmerT_33715-T1
Valid prediction for GlimmerHMM_glimmerT_33725-T1
Valid prediction for GlimmerHMM_glimmerT_33723-T1
Valid prediction for Augustus_model.g22537.t1
Valid prediction for snap_scaffold_14-snap.900-T1
Valid prediction for GlimmerHMM_glimmerT_33734-T1
Couldn't classify 130679, 130744
Couldn't classify 131664, 131799
Sorry, prediction pasa_asmbl_13063.p1 fails validation.
(GGC)	 TG	130679-130744	GT	AGG
(ATC)	 AG	131145-131240	GT	AGG
(GGG)	 AG	131349-131545	GT	AGG
(GTG)	 AG	131664-131799	CA	ACC
-recovered pasa_asmbl_13063.p1, internal, 131145, 131240
-recovered pasa_asmbl_13063.p1, internal, 131349, 131545
Valid prediction for snap_scaffold_14-snap.905-T1
Valid prediction for Augustus_model.g22538.t1
Valid prediction for GlimmerHMM_glimmerT_33732-T1
Valid prediction for snap_scaffold_14-snap.912-T1
Valid prediction for snap_scaffold_14-snap.904-T1
Valid prediction for snap_scaffold_14-snap.911-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 14203, rend_intergenic: 3107  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27969, rend_intergenic: 26877  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55571, rend_intergenic: 53498  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71463, rend_intergenic: 68134  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75513, rend_intergenic: 72161  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79157, rend_intergenic: 75540  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84521, rend_intergenic: 80075  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101135, rend_intergenic: 98381  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 139884
-exon list size: 313


building trellis

0.3    
0.6    
1.0    
1.3    
1.6    
1.9    
2.2    
2.5    
2.9    
3.2    
3.5    
3.8    
4.1    
4.4    
4.8    
5.1    
5.4    
5.7    
6.0    
6.3    
6.7    
7.0    
7.3    
7.6    
7.9    
8.3    
8.6    
8.9    
9.2    
9.5    
9.8    
10.2    
10.5    
10.8    
11.1    
11.4    
11.7    
12.1    
12.4    
12.7    
13.0    
13.3    
13.7    
14.0    
14.3    
14.6    
14.9    
15.2    
15.6    
15.9    
16.2    
16.5    
16.8    
17.1    
17.5    
17.8    
18.1    
18.4    
18.7    
19.0    
19.4    
19.7    
20.0    
20.3    
20.6    
21.0    
21.3    
21.6    
21.9    
22.2    
22.5    
22.9    
23.2    
23.5    
23.8    
24.1    
24.4    
24.8    
25.1    
25.4    
25.7    
26.0    
26.3    
26.7    
27.0    
27.3    
27.6    
27.9    
28.3    
28.6    
28.9    
29.2    
29.5    
29.8    
30.2    
30.5    
30.8    
31.1    
31.4    
31.7    
32.1    
32.4    
32.7    
33.0    
33.3    
33.7    
34.0    
34.3    
34.6    
34.9    
35.2    
35.6    
35.9    
36.2    
36.5    
36.8    
37.1    
37.5    
37.8    
38.1    
38.4    
38.7    
39.0    
39.4    
39.7    
40.0    
40.3    
40.6    
41.0    
41.3    
41.6    
41.9    
42.2    
42.5    
42.9    
43.2    
43.5    
43.8    
44.1    
44.4    
44.8    
45.1    
45.4    
45.7    
46.0    
46.3    
46.7    
47.0    
47.3    
47.6    
47.9    
48.3    
48.6    
48.9    
49.2    
49.5    
49.8    
50.2    
50.5    
50.8    
51.1    
51.4    
51.7    
52.1    
52.4    
52.7    
53.0    
53.3    
53.7    
54.0    
54.3    
54.6    
54.9    
55.2    
55.6    
55.9    
56.2    
56.5    
56.8    
57.1    
57.5    
57.8    
58.1    
58.4    
58.7    
59.0    
59.4    
59.7    
60.0    
60.3    
60.6    
61.0    
61.3    
61.6    
61.9    
62.2    
62.5    
62.9    
63.2    
63.5    
63.8    
64.1    
64.4    
64.8    
65.1    
65.4    
65.7    
66.0    
66.3    
66.7    
67.0    
67.3    
67.6    
67.9    
68.3    
68.6    
68.9    
69.2    
69.5    
69.8    
70.2    
70.5    
70.8    
71.1    
71.4    
71.7    
72.1    
72.4    
72.7    
73.0    
73.3    
73.7    
74.0    
74.3    
74.6    
74.9    
75.2    
75.6    
75.9    
76.2    
76.5    
76.8    
77.1    
77.5    
77.8    
78.1    
78.4    
78.7    
79.0    
79.4    
79.7    
80.0    
80.3    
80.6    
81.0    
81.3    
81.6    
81.9    
82.2    
82.5    
82.9    
83.2    
83.5    
83.8    
84.1    
84.4    
84.8    
85.1    
85.4    
85.7    
86.0    
86.3    
86.7    
87.0    
87.3    
87.6    
87.9    
88.3    
88.6    
88.9    
89.2    
89.5    
89.8    
90.2    
90.5    
90.8    
91.1    
91.4    
91.7    
92.1    
92.4    
92.7    
93.0    
93.3    
93.7    
94.0    
94.3    
94.6    
94.9    
95.2    
95.6    
95.9    
96.2    
96.5    
96.8    
97.1    
97.5    
97.8    
98.1    
98.4    
98.7    
99.0    
99.4    
99.7    
-found 24 predictions from path traversal
Error with prediction: snap lend_intergenic: 14203, rend_intergenic: 3107  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27969, rend_intergenic: 26877  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55571, rend_intergenic: 53498  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71463, rend_intergenic: 68134  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75513, rend_intergenic: 72161  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79157, rend_intergenic: 75540  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84521, rend_intergenic: 80075  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101135, rend_intergenic: 98381  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 16 predictions persist after filtering for low support