-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_14/scaffold_14_4292999-4519188

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_14-snap.817-T1
Valid prediction for GlimmerHMM_glimmerT_33660-T1
Valid prediction for snap_scaffold_14-snap.839-T1
Valid prediction for snap_scaffold_14-snap.826-T1
Valid prediction for Augustus_model.g22523.t1
Valid prediction for Augustus_model.g22521.t1
Valid prediction for GlimmerHMM_glimmerT_33650-T1
Valid prediction for GlimmerHMM_glimmerT_33671-T1
Valid prediction for snap_scaffold_14-snap.829-T1
Valid prediction for GlimmerHMM_glimmerT_33680-T1
Valid prediction for snap_scaffold_14-snap.801-T1
Valid prediction for snap_scaffold_14-snap.822-T1
Valid prediction for snap_scaffold_14-snap.834-T1
Valid prediction for Augustus_model.g22517.t1
Valid prediction for snap_scaffold_14-snap.808-T1
Valid prediction for GlimmerHMM_glimmerT_33669-T1
Valid prediction for Augustus_model.g22525.t1
Valid prediction for snap_scaffold_14-snap.842-T1
Valid prediction for GlimmerHMM_glimmerT_33683-T1
Valid prediction for snap_scaffold_14-snap.843-T1
Valid prediction for Augustus_model.g22509.t1
Valid prediction for Augustus_model.g22513.t1
Valid prediction for snap_scaffold_14-snap.847-T1
Valid prediction for GlimmerHMM_glimmerT_33677-T1
Valid prediction for GlimmerHMM_glimmerT_33659-T1
Valid prediction for GlimmerHMM_glimmerT_33664-T1
Valid prediction for snap_scaffold_14-snap.830-T1
Valid prediction for snap_scaffold_14-snap.848-T1
Valid prediction for snap_scaffold_14-snap.820-T1
Valid prediction for Augustus_model.g22511.t1
Valid prediction for snap_scaffold_14-snap.832-T1
Valid prediction for Augustus_model.g22518.t1
Valid prediction for snap_scaffold_14-snap.851-T1
Valid prediction for GlimmerHMM_glimmerT_33673-T1
Valid prediction for snap_scaffold_14-snap.799-T1
Valid prediction for snap_scaffold_14-snap.803-T1
Valid prediction for GlimmerHMM_glimmerT_33654-T1
Valid prediction for snap_scaffold_14-snap.855-T1
Valid prediction for snap_scaffold_14-snap.841-T1
Valid prediction for GlimmerHMM_glimmerT_33675-T1
Valid prediction for snap_scaffold_14-snap.816-T1
Valid prediction for GlimmerHMM_glimmerT_33670-T1
Valid prediction for snap_scaffold_14-snap.852-T1
Valid prediction for snap_scaffold_14-snap.824-T1
Valid prediction for snap_scaffold_14-snap.844-T1
Valid prediction for snap_scaffold_14-snap.825-T1
Valid prediction for snap_scaffold_14-snap.837-T1
Valid prediction for snap_scaffold_14-snap.836-T1
Valid prediction for GlimmerHMM_glimmerT_33647-T1
Valid prediction for snap_scaffold_14-snap.814-T1
Valid prediction for GlimmerHMM_glimmerT_33681-T1
Valid prediction for GlimmerHMM_glimmerT_33662-T1
Valid prediction for GlimmerHMM_glimmerT_33658-T1
Valid prediction for snap_scaffold_14-snap.812-T1
Valid prediction for GlimmerHMM_glimmerT_33648-T1
Valid prediction for snap_scaffold_14-snap.809-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g22520.t1
Valid prediction for snap_scaffold_14-snap.807-T1
Valid prediction for snap_scaffold_14-snap.806-T1
Valid prediction for CodingQuarry_transcript_15630-T1
Valid prediction for GlimmerHMM_glimmerT_33678-T1
Valid prediction for GlimmerHMM_glimmerT_33653-T1
Valid prediction for GlimmerHMM_glimmerT_33666-T1
Valid prediction for snap_scaffold_14-snap.811-T1
Valid prediction for GlimmerHMM_glimmerT_33672-T1
Valid prediction for snap_scaffold_14-snap.802-T1
Valid prediction for snap_scaffold_14-snap.804-T1
Valid prediction for snap_scaffold_14-snap.810-T1
Valid prediction for GlimmerHMM_glimmerT_33646-T1
Valid prediction for GlimmerHMM_glimmerT_33652-T1
Valid prediction for snap_scaffold_14-snap.849-T1
Valid prediction for GlimmerHMM_glimmerT_33679-T1
Valid prediction for snap_scaffold_14-snap.800-T1
Valid prediction for snap_scaffold_14-snap.815-T1
Valid prediction for snap_scaffold_14-snap.805-T1
Valid prediction for snap_scaffold_14-snap.823-T1
Valid prediction for GlimmerHMM_glimmerT_33645-T1
Valid prediction for Augustus_model.g22519.t1
Valid prediction for snap_scaffold_14-snap.828-T1
Valid prediction for snap_scaffold_14-snap.840-T1
Valid prediction for GlimmerHMM_glimmerT_33649-T1
Valid prediction for GlimmerHMM_glimmerT_33661-T1
Valid prediction for GlimmerHMM_glimmerT_33665-T1
Valid prediction for snap_scaffold_14-snap.846-T1
Valid prediction for pasa_asmbl_13047.p1
Valid prediction for GlimmerHMM_glimmerT_33676-T1
Valid prediction for snap_scaffold_14-snap.854-T1
Valid prediction for snap_scaffold_14-snap.821-T1
Valid prediction for snap_scaffold_14-snap.835-T1
Valid prediction for snap_scaffold_14-snap.831-T1
Valid prediction for Augustus_model.g22508.t1
Valid prediction for Augustus_model.g22507.t1
Valid prediction for snap_scaffold_14-snap.845-T1
Valid prediction for GlimmerHMM_glimmerT_33667-T1
Valid prediction for Augustus_model.g22522.t1
Valid prediction for GlimmerHMM_glimmerT_33657-T1
Valid prediction for snap_scaffold_14-snap.813-T1
Valid prediction for GlimmerHMM_glimmerT_33655-T1
Valid prediction for GlimmerHMM_glimmerT_33674-T1
Valid prediction for GlimmerHMM_glimmerT_33682-T1
Valid prediction for snap_scaffold_14-snap.853-T1
Valid prediction for Augustus_model.g22512.t1
Valid prediction for Augustus_model.g22516.t1
Valid prediction for pasa_asmbl_13049.p1
Valid prediction for snap_scaffold_14-snap.833-T1
Valid prediction for HiQ_model.g22510.t1
Valid prediction for GlimmerHMM_glimmerT_33656-T1
Valid prediction for snap_scaffold_14-snap.818-T1
Valid prediction for snap_scaffold_14-snap.819-T1
Valid prediction for snap_scaffold_14-snap.827-T1
Valid prediction for GlimmerHMM_glimmerT_33663-T1
Valid prediction for snap_scaffold_14-snap.850-T1
Valid prediction for Augustus_model.g22524.t1
Valid prediction for snap_scaffold_14-snap.856-T1
Valid prediction for GlimmerHMM_glimmerT_33651-T1
Valid prediction for Augustus_model.g22515.t1
Valid prediction for GlimmerHMM_glimmerT_33668-T1
Valid prediction for snap_scaffold_14-snap.838-T1
Valid prediction for Augustus_model.g22514.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8723, rend_intergenic: 4100  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 13528, rend_intergenic: 9873  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22837, rend_intergenic: 17913  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37656, rend_intergenic: 24138  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48092, rend_intergenic: 44401  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 60850, rend_intergenic: 51205  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64509, rend_intergenic: 61225  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67809, rend_intergenic: 67167  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72048, rend_intergenic: 68223  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76452, rend_intergenic: 72097  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81401, rend_intergenic: 77181  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89734, rend_intergenic: 81909  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94664, rend_intergenic: 91745  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101829, rend_intergenic: 95645  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107242, rend_intergenic: 106059  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114286, rend_intergenic: 107854  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124808, rend_intergenic: 120586  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135003, rend_intergenic: 129400  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136755, rend_intergenic: 135572  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140694, rend_intergenic: 136765  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 151228, rend_intergenic: 147793  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155278, rend_intergenic: 152026  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157513, rend_intergenic: 155725  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170786, rend_intergenic: 162888  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 173683, rend_intergenic: 172100  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 202258, rend_intergenic: 190796  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 208947, rend_intergenic: 205956  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 214564, rend_intergenic: 213958  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 225019, rend_intergenic: 223393  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 226190
-exon list size: 419


building trellis

0.2    
0.5    
0.7    
1.0    
1.2    
1.4    
1.7    
1.9    
2.1    
2.4    
2.6    
2.9    
3.1    
3.3    
3.6    
3.8    
4.0    
4.3    
4.5    
4.8    
5.0    
5.2    
5.5    
5.7    
5.9    
6.2    
6.4    
6.7    
6.9    
7.1    
7.4    
7.6    
7.8    
8.1    
8.3    
8.6    
8.8    
9.0    
9.3    
9.5    
9.7    
10.0    
10.2    
10.5    
10.7    
10.9    
11.2    
11.4    
11.6    
11.9    
12.1    
12.4    
12.6    
12.8    
13.1    
13.3    
13.5    
13.8    
14.0    
14.3    
14.5    
14.7    
15.0    
15.2    
15.4    
15.7    
15.9    
16.2    
16.4    
16.6    
16.9    
17.1    
17.3    
17.6    
17.8    
18.1    
18.3    
18.5    
18.8    
19.0    
19.2    
19.5    
19.7    
20.0    
20.2    
20.4    
20.7    
20.9    
21.1    
21.4    
21.6    
21.9    
22.1    
22.3    
22.6    
22.8    
23.0    
23.3    
23.5    
23.8    
24.0    
24.2    
24.5    
24.7    
24.9    
25.2    
25.4    
25.7    
25.9    
26.1    
26.4    
26.6    
26.8    
27.1    
27.3    
27.6    
27.8    
28.0    
28.3    
28.5    
28.7    
29.0    
29.2    
29.5    
29.7    
29.9    
30.2    
30.4    
30.6    
30.9    
31.1    
31.4    
31.6    
31.8    
32.1    
32.3    
32.5    
32.8    
33.0    
33.3    
33.5    
33.7    
34.0    
34.2    
34.4    
34.7    
34.9    
35.2    
35.4    
35.6    
35.9    
36.1    
36.3    
36.6    
36.8    
37.1    
37.3    
37.5    
37.8    
38.0    
38.2    
38.5    
38.7    
39.0    
39.2    
39.4    
39.7    
39.9    
40.1    
40.4    
40.6    
40.9    
41.1    
41.3    
41.6    
41.8    
42.0    
42.3    
42.5    
42.8    
43.0    
43.2    
43.5    
43.7    
43.9    
44.2    
44.4    
44.7    
44.9    
45.1    
45.4    
45.6    
45.8    
46.1    
46.3    
46.6    
46.8    
47.0    
47.3    
47.5    
47.7    
48.0    
48.2    
48.5    
48.7    
48.9    
49.2    
49.4    
49.6    
49.9    
50.1    
50.4    
50.6    
50.8    
51.1    
51.3    
51.5    
51.8    
52.0    
52.3    
52.5    
52.7    
53.0    
53.2    
53.4    
53.7    
53.9    
54.2    
54.4    
54.6    
54.9    
55.1    
55.3    
55.6    
55.8    
56.1    
56.3    
56.5    
56.8    
57.0    
57.2    
57.5    
57.7    
58.0    
58.2    
58.4    
58.7    
58.9    
59.1    
59.4    
59.6    
59.9    
60.1    
60.3    
60.6    
60.8    
61.0    
61.3    
61.5    
61.8    
62.0    
62.2    
62.5    
62.7    
62.9    
63.2    
63.4    
63.7    
63.9    
64.1    
64.4    
64.6    
64.8    
65.1    
65.3    
65.6    
65.8    
66.0    
66.3    
66.5    
66.7    
67.0    
67.2    
67.5    
67.7    
67.9    
68.2    
68.4    
68.6    
68.9    
69.1    
69.4    
69.6    
69.8    
70.1    
70.3    
70.5    
70.8    
71.0    
71.3    
71.5    
71.7    
72.0    
72.2    
72.4    
72.7    
72.9    
73.2    
73.4    
73.6    
73.9    
74.1    
74.3    
74.6    
74.8    
75.1    
75.3    
75.5    
75.8    
76.0    
76.2    
76.5    
76.7    
77.0    
77.2    
77.4    
77.7    
77.9    
78.1    
78.4    
78.6    
78.9    
79.1    
79.3    
79.6    
79.8    
80.0    
80.3    
80.5    
80.8    
81.0    
81.2    
81.5    
81.7    
81.9    
82.2    
82.4    
82.7    
82.9    
83.1    
83.4    
83.6    
83.8    
84.1    
84.3    
84.6    
84.8    
85.0    
85.3    
85.5    
85.7    
86.0    
86.2    
86.5    
86.7    
86.9    
87.2    
87.4    
87.6    
87.9    
88.1    
88.4    
88.6    
88.8    
89.1    
89.3    
89.5    
89.8    
90.0    
90.3    
90.5    
90.7    
91.0    
91.2    
91.4    
91.7    
91.9    
92.2    
92.4    
92.6    
92.9    
93.1    
93.3    
93.6    
93.8    
94.1    
94.3    
94.5    
94.8    
95.0    
95.2    
95.5    
95.7    
96.0    
96.2    
96.4    
96.7    
96.9    
97.1    
97.4    
97.6    
97.9    
98.1    
98.3    
98.6    
98.8    
99.0    
99.3    
99.5    
99.8    
-found 42 predictions from path traversal
Error with prediction: snap lend_intergenic: 8723, rend_intergenic: 4100  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 13528, rend_intergenic: 9873  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22837, rend_intergenic: 17913  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37656, rend_intergenic: 24138  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48092, rend_intergenic: 44401  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 60850, rend_intergenic: 51205  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64509, rend_intergenic: 61225  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67809, rend_intergenic: 67167  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72048, rend_intergenic: 68223  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76452, rend_intergenic: 72097  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81401, rend_intergenic: 77181  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89734, rend_intergenic: 81909  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94664, rend_intergenic: 91745  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101829, rend_intergenic: 95645  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107242, rend_intergenic: 106059  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114286, rend_intergenic: 107854  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124808, rend_intergenic: 120586  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135003, rend_intergenic: 129400  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136755, rend_intergenic: 135572  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140694, rend_intergenic: 136765  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 151228, rend_intergenic: 147793  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155278, rend_intergenic: 152026  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157513, rend_intergenic: 155725  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170786, rend_intergenic: 162888  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 173683, rend_intergenic: 172100  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 202258, rend_intergenic: 190796  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 208947, rend_intergenic: 205956  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 214564, rend_intergenic: 213958  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 225019, rend_intergenic: 223393  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 16 predictions persist after filtering for low support