-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_14/scaffold_14_4242143-4294772 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_33640-T1 Valid prediction for GlimmerHMM_glimmerT_33636-T1 Valid prediction for Augustus_model.g22502.t1 Valid prediction for Augustus_model.g22504.t1 Valid prediction for GlimmerHMM_glimmerT_33641-T1 Couldn't classify 35062, 36198 Sorry, prediction pasa_asmbl_11997.p1 fails validation. (AGC) TG 35062-36198 AC CAA Couldn't classify 32643, 32753 Couldn't classify 33773, 33843 Sorry, prediction pasa_asmbl_11995.p1 fails validation. (GAC) AG 32643-32753 GT AGG (GAC) AG 33185-33286 GT CAG (GCT) AG 33551-33689 GT GGG (GTC) AG 33773-33843 AG ACA -recovered pasa_asmbl_11995.p1, internal, 32643, 32753 -recovered pasa_asmbl_11995.p1, internal, 33185, 33286 -recovered pasa_asmbl_11995.p1, internal, 33551, 33689 Valid prediction for GlimmerHMM_glimmerT_33638-T1 Valid prediction for snap_scaffold_14-snap.790-T1 Valid prediction for snap_scaffold_14-snap.793-T1 Couldn't classify 9466, 9590 Sorry, prediction pasa_asmbl_11992.p1 fails validation. (AGA) AG 9466-9590 GT AAG (GCT) AG 9764-9948 GT AGG (GCG) AG 10240-10451 CG GAC add_exon() Sorry, pasa_asmbl_11992.p1 9764-9948-terminal-2 is invalid. -recovered pasa_asmbl_11992.p1, terminal, 9764, 9948 -recovered pasa_asmbl_11992.p1, terminal, 10240, 10451 -recovered pasa_asmbl_11992.p1, internal, 9466, 9590 -recovered pasa_asmbl_11992.p1, internal, 9764, 9948 Valid prediction for snap_scaffold_14-snap.798-T1 Valid prediction for snap_scaffold_14-snap.792-T1 Valid prediction for Augustus_model.g22506.t1 Valid prediction for GlimmerHMM_glimmerT_33642-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_33637-T1 Couldn't classify 45651, 46094 Sorry, prediction pasa_asmbl_13044.p2 fails validation. (ATG) AT 45651-46094 CA CGC Valid prediction for Augustus_model.g22500.t1 Valid prediction for Augustus_model.g22501.t1 Valid prediction for snap_scaffold_14-snap.794-T1 Valid prediction for snap_scaffold_14-snap.797-T1 Valid prediction for snap_scaffold_14-snap.788-T1 Valid prediction for Augustus_model.g22505.t1 Valid prediction for Augustus_model.g22507.t1 Valid prediction for GlimmerHMM_glimmerT_33644-T1 Valid prediction for snap_scaffold_14-snap.787-T1 Valid prediction for GlimmerHMM_glimmerT_33639-T1 Valid prediction for pasa_asmbl_13047.p1 Valid prediction for snap_scaffold_14-snap.795-T1 Valid prediction for snap_scaffold_14-snap.789-T1 Couldn't classify 8951, 9121 Sorry, prediction pasa_asmbl_13046.p1 fails validation. (GAC) AG 8951-9121 GT AGG (GTG) AG 10373-10526 GT CGG (GAC) AG 10942-10991 GT TGG (GTG) AG 11956-12108 GT AGG (GTG) AG 12235-12402 AC AGA -recovered pasa_asmbl_13046.p1, terminal, 12235, 12402 -recovered pasa_asmbl_13046.p1, internal, 8951, 9121 -recovered pasa_asmbl_13046.p1, internal, 10373, 10526 -recovered pasa_asmbl_13046.p1, internal, 10942, 10991 -recovered pasa_asmbl_13046.p1, internal, 11956, 12108 Valid prediction for GlimmerHMM_glimmerT_33635-T1 Valid prediction for snap_scaffold_14-snap.796-T1 Valid prediction for Augustus_model.g22503.t1 Valid prediction for snap_scaffold_14-snap.791-T1 Valid prediction for GlimmerHMM_glimmerT_33643-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 23082, rend_intergenic: 12697 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 38788, rend_intergenic: 23146 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 52310, rend_intergenic: 41068 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 52630 -exon list size: 136 building trellis 0.7 1.4 2.2 2.9 3.6 4.3 5.1 5.8 6.5 7.2 8.0 8.7 9.4 10.1 10.9 11.6 12.3 13.0 13.8 14.5 15.2 15.9 16.7 17.4 18.1 18.8 19.6 20.3 21.0 21.7 22.5 23.2 23.9 24.6 25.4 26.1 26.8 27.5 28.3 29.0 29.7 30.4 31.2 31.9 32.6 33.3 34.1 34.8 35.5 36.2 37.0 37.7 38.4 39.1 39.9 40.6 41.3 42.0 42.8 43.5 44.2 44.9 45.7 46.4 47.1 47.8 48.6 49.3 50.0 50.7 51.4 52.2 52.9 53.6 54.3 55.1 55.8 56.5 57.2 58.0 58.7 59.4 60.1 60.9 61.6 62.3 63.0 63.8 64.5 65.2 65.9 66.7 67.4 68.1 68.8 69.6 70.3 71.0 71.7 72.5 73.2 73.9 74.6 75.4 76.1 76.8 77.5 78.3 79.0 79.7 80.4 81.2 81.9 82.6 83.3 84.1 84.8 85.5 86.2 87.0 87.7 88.4 89.1 89.9 90.6 91.3 92.0 92.8 93.5 94.2 94.9 95.7 96.4 97.1 97.8 98.6 99.3 -found 11 predictions from path traversal Error with prediction: snap lend_intergenic: 23082, rend_intergenic: 12697 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 38788, rend_intergenic: 23146 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 52310, rend_intergenic: 41068 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 8 predictions persist after filtering for low support