-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_14/scaffold_14_421895-595645

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for HiQ_model.g22154.t1
Valid prediction for GlimmerHMM_glimmerT_33174-T1
Valid prediction for Augustus_model.g22155.t1
Valid prediction for snap_scaffold_14-snap.99-T1
Valid prediction for snap_scaffold_14-snap.107-T1
Valid prediction for snap_scaffold_14-snap.98-T1
Valid prediction for GlimmerHMM_glimmerT_33179-T1
Valid prediction for snap_scaffold_14-snap.91-T1
Valid prediction for snap_scaffold_14-snap.83-T1
Valid prediction for snap_scaffold_14-snap.110-T1
Valid prediction for snap_scaffold_14-snap.89-T1
Valid prediction for GlimmerHMM_glimmerT_33172-T1
Valid prediction for snap_scaffold_14-snap.109-T1
Valid prediction for GlimmerHMM_glimmerT_33178-T1
Couldn't classify 138665, 138912
Couldn't classify 143112, 143288
Sorry, prediction pasa_asmbl_11760.p1 fails validation.
(TGC)	 AG	138665-138912	GT	CGG
(TCT)	 AG	139677-139790	GT	AAG
(AAA)	 AG	140788-141199	GT	CTG
(CAT)	 AG	143112-143288	AA	GTA
-recovered pasa_asmbl_11760.p1, internal, 138665, 138912
-recovered pasa_asmbl_11760.p1, internal, 139677, 139790
-recovered pasa_asmbl_11760.p1, internal, 140788, 141199
Valid prediction for Augustus_model.g22152.t1
Valid prediction for GlimmerHMM_glimmerT_33177-T1
Valid prediction for Augustus_model.g22150.t1
Couldn't classify 152786, 153779
Sorry, prediction pasa_asmbl_11762.p1 fails validation.
(GGC)	 TA	152786-153779	GT	AGG
(GAT)	 AG	153917-154062	GT	AGG
(CGA)	 AG	154936-154956	GT	AAG
-recovered pasa_asmbl_11762.p1, terminal, 154936, 154956
-recovered pasa_asmbl_11762.p1, internal, 153917, 154062
-recovered pasa_asmbl_11762.p1, internal, 154936, 154956
Valid prediction for snap_scaffold_14-snap.101-T1
Valid prediction for GlimmerHMM_glimmerT_33173-T1
Valid prediction for GlimmerHMM_glimmerT_33155-T1
Valid prediction for snap_scaffold_14-snap.102-T1
Valid prediction for Augustus_model.g22140.t1
Valid prediction for GlimmerHMM_glimmerT_33164-T1
Couldn't classify 61970, 62407
Sorry, prediction pasa_asmbl_11757.p1 fails validation.
(GCC)	 GC	61970-62407	GG	AGG
Valid prediction for Augustus_model.g22156.t1
Valid prediction for snap_scaffold_14-snap.88-T1
Valid prediction for snap_scaffold_14-snap.108-T1
Valid prediction for GlimmerHMM_glimmerT_33162-T1
Valid prediction for GlimmerHMM_glimmerT_33165-T1
Valid prediction for GlimmerHMM_glimmerT_33175-T1
Valid prediction for snap_scaffold_14-snap.85-T1
Valid prediction for GlimmerHMM_glimmerT_33160-T1
Valid prediction for snap_scaffold_14-snap.103-T1
Valid prediction for Augustus_model.g22136.t1
Valid prediction for snap_scaffold_14-snap.96-T1
Valid prediction for snap_scaffold_14-snap.86-T1
Valid prediction for Augustus_model.g22147.t1
Valid prediction for Augustus_model.g22139.t1
Valid prediction for snap_scaffold_14-snap.93-T1
Valid prediction for GlimmerHMM_glimmerT_33171-T1
Valid prediction for snap_scaffold_14-snap.111-T1
Valid prediction for GlimmerHMM_glimmerT_33159-T1
Valid prediction for snap_scaffold_14-snap.92-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_33167-T1
Valid prediction for snap_scaffold_14-snap.90-T1
Valid prediction for GlimmerHMM_glimmerT_33161-T1
Valid prediction for GlimmerHMM_glimmerT_33176-T1
Valid prediction for Augustus_model.g22151.t1
Valid prediction for snap_scaffold_14-snap.100-T1
Valid prediction for GlimmerHMM_glimmerT_33170-T1
Valid prediction for snap_scaffold_14-snap.106-T1
Valid prediction for snap_scaffold_14-snap.87-T1
Valid prediction for snap_scaffold_14-snap.95-T1
Valid prediction for Augustus_model.g22142.t1
Valid prediction for GlimmerHMM_glimmerT_33166-T1
Valid prediction for GlimmerHMM_glimmerT_33158-T1
Valid prediction for Augustus_model.g22149.t1
Valid prediction for GlimmerHMM_glimmerT_33169-T1
Valid prediction for Augustus_model.g22153.t1
Valid prediction for snap_scaffold_14-snap.84-T1
Couldn't classify 16414, 16749
Sorry, prediction pasa_asmbl_11765.p1 fails validation.
(CGG)	 GC	16414-16749	AA	AAA
Valid prediction for GlimmerHMM_glimmerT_33154-T1
Valid prediction for GlimmerHMM_glimmerT_33156-T1
Valid prediction for GlimmerHMM_glimmerT_33168-T1
Valid prediction for Augustus_model.g22138.t1
Valid prediction for Augustus_model.g22135.t1
Valid prediction for Augustus_model.g22144.t1
Valid prediction for Augustus_model.g22137.t1
Valid prediction for GlimmerHMM_glimmerT_33157-T1
Valid prediction for GlimmerHMM_glimmerT_33153-T1
Valid prediction for Augustus_model.g22146.t1
Valid prediction for GlimmerHMM_glimmerT_33163-T1
Valid prediction for snap_scaffold_14-snap.105-T1
Valid prediction for snap_scaffold_14-snap.94-T1
Valid prediction for Augustus_model.g22145.t1
Valid prediction for snap_scaffold_14-snap.104-T1
Couldn't classify 39038, 39757
Sorry, prediction pasa_asmbl_11758.p1 fails validation.
(TTG)	 CT	39038-39757	CT	ATC
Valid prediction for Augustus_model.g22143.t1
Valid prediction for Augustus_model.g22141.t1
Valid prediction for snap_scaffold_14-snap.97-T1
Valid prediction for Augustus_model.g22148.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 54841, rend_intergenic: 52905  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 173751
-exon list size: 220


building trellis

0.5    
0.9    
1.4    
1.8    
2.3    
2.7    
3.2    
3.6    
4.1    
4.5    
5.0    
5.4    
5.9    
6.3    
6.8    
7.2    
7.7    
8.1    
8.6    
9.0    
9.5    
9.9    
10.4    
10.8    
11.3    
11.7    
12.2    
12.6    
13.1    
13.5    
14.0    
14.4    
14.9    
15.3    
15.8    
16.2    
16.7    
17.1    
17.6    
18.0    
18.5    
18.9    
19.4    
19.8    
20.3    
20.7    
21.2    
21.6    
22.1    
22.5    
23.0    
23.4    
23.9    
24.3    
24.8    
25.2    
25.7    
26.1    
26.6    
27.0    
27.5    
27.9    
28.4    
28.8    
29.3    
29.7    
30.2    
30.6    
31.1    
31.5    
32.0    
32.4    
32.9    
33.3    
33.8    
34.2    
34.7    
35.1    
35.6    
36.0    
36.5    
36.9    
37.4    
37.8    
38.3    
38.7    
39.2    
39.6    
40.1    
40.5    
41.0    
41.4    
41.9    
42.3    
42.8    
43.2    
43.7    
44.1    
44.6    
45.0    
45.5    
45.9    
46.4    
46.8    
47.3    
47.7    
48.2    
48.6    
49.1    
49.5    
50.0    
50.5    
50.9    
51.4    
51.8    
52.3    
52.7    
53.2    
53.6    
54.1    
54.5    
55.0    
55.4    
55.9    
56.3    
56.8    
57.2    
57.7    
58.1    
58.6    
59.0    
59.5    
59.9    
60.4    
60.8    
61.3    
61.7    
62.2    
62.6    
63.1    
63.5    
64.0    
64.4    
64.9    
65.3    
65.8    
66.2    
66.7    
67.1    
67.6    
68.0    
68.5    
68.9    
69.4    
69.8    
70.3    
70.7    
71.2    
71.6    
72.1    
72.5    
73.0    
73.4    
73.9    
74.3    
74.8    
75.2    
75.7    
76.1    
76.6    
77.0    
77.5    
77.9    
78.4    
78.8    
79.3    
79.7    
80.2    
80.6    
81.1    
81.5    
82.0    
82.4    
82.9    
83.3    
83.8    
84.2    
84.7    
85.1    
85.6    
86.0    
86.5    
86.9    
87.4    
87.8    
88.3    
88.7    
89.2    
89.6    
90.1    
90.5    
91.0    
91.4    
91.9    
92.3    
92.8    
93.2    
93.7    
94.1    
94.6    
95.0    
95.5    
95.9    
96.4    
96.8    
97.3    
97.7    
98.2    
98.6    
99.1    
99.5    
-found 29 predictions from path traversal
Error with prediction: snap lend_intergenic: 54841, rend_intergenic: 52905  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 24 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 15866
-exon list size: 8


building trellis

10.0    
20.0    
30.0    
40.0    
50.0    
60.0    
70.0    
80.0    
90.0    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support
	-no exons in range 4599 - 15866