-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_14/scaffold_14_3958537-4100875

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_14-snap.752-T1
Valid prediction for snap_scaffold_14-snap.745-T1
Valid prediction for Augustus_model.g22468.t1
Valid prediction for Augustus_model.g22472.t1
Valid prediction for Augustus_model.g22480.t1
Valid prediction for GlimmerHMM_glimmerT_33589-T1
Valid prediction for snap_scaffold_14-snap.712-T1
Valid prediction for snap_scaffold_14-snap.751-T1
Valid prediction for GlimmerHMM_glimmerT_33587-T1
Valid prediction for snap_scaffold_14-snap.728-T1
Valid prediction for GlimmerHMM_glimmerT_33607-T1
Valid prediction for snap_scaffold_14-snap.723-T1
Valid prediction for Augustus_model.g22467.t1
Valid prediction for snap_scaffold_14-snap.727-T1
Valid prediction for GlimmerHMM_glimmerT_33599-T1
Valid prediction for GlimmerHMM_glimmerT_33608-T1
Valid prediction for snap_scaffold_14-snap.722-T1
Valid prediction for snap_scaffold_14-snap.717-T1
Valid prediction for snap_scaffold_14-snap.740-T1
Valid prediction for snap_scaffold_14-snap.718-T1
Valid prediction for GlimmerHMM_glimmerT_33595-T1
Valid prediction for Augustus_model.g22475.t1
Valid prediction for Augustus_model.g22481.t1
Valid prediction for snap_scaffold_14-snap.715-T1
Valid prediction for snap_scaffold_14-snap.748-T1
Valid prediction for snap_scaffold_14-snap.721-T1
Valid prediction for snap_scaffold_14-snap.735-T1
Valid prediction for GlimmerHMM_glimmerT_33591-T1
Valid prediction for Augustus_model.g22470.t1
Valid prediction for GlimmerHMM_glimmerT_33593-T1
Valid prediction for snap_scaffold_14-snap.720-T1
Valid prediction for snap_scaffold_14-snap.744-T1
Valid prediction for Augustus_model.g22466.t1
Valid prediction for snap_scaffold_14-snap.737-T1
Valid prediction for GlimmerHMM_glimmerT_33605-T1
Valid prediction for snap_scaffold_14-snap.746-T1
Valid prediction for snap_scaffold_14-snap.733-T1
Valid prediction for GlimmerHMM_glimmerT_33597-T1
Valid prediction for GlimmerHMM_glimmerT_33609-T1
Valid prediction for snap_scaffold_14-snap.732-T1
Valid prediction for Augustus_model.g22479.t1
Valid prediction for snap_scaffold_14-snap.725-T1
Valid prediction for GlimmerHMM_glimmerT_33588-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_14-snap.726-T1
Valid prediction for GlimmerHMM_glimmerT_33604-T1
Valid prediction for snap_scaffold_14-snap.742-T1
Valid prediction for snap_scaffold_14-snap.730-T1
Valid prediction for snap_scaffold_14-snap.747-T1
Valid prediction for snap_scaffold_14-snap.729-T1
Sorry, intron length (6) is less than minimum required (10)
Valid prediction for Augustus_model.g22465.t1
Valid prediction for GlimmerHMM_glimmerT_33602-T1
Valid prediction for GlimmerHMM_glimmerT_33592-T1
Valid prediction for snap_scaffold_14-snap.749-T1
Valid prediction for snap_scaffold_14-snap.739-T1
Valid prediction for snap_scaffold_14-snap.714-T1
Valid prediction for snap_scaffold_14-snap.736-T1
Valid prediction for Augustus_model.g22477.t1
Valid prediction for snap_scaffold_14-snap.716-T1
Valid prediction for GlimmerHMM_glimmerT_33596-T1
Valid prediction for GlimmerHMM_glimmerT_33601-T1
Valid prediction for Augustus_model.g22473.t1
Valid prediction for snap_scaffold_14-snap.734-T1
Valid prediction for GlimmerHMM_glimmerT_33598-T1
Valid prediction for snap_scaffold_14-snap.719-T1
Valid prediction for snap_scaffold_14-snap.711-T1
Valid prediction for Augustus_model.g22476.t1
Valid prediction for GlimmerHMM_glimmerT_33590-T1
Valid prediction for GlimmerHMM_glimmerT_33606-T1
Valid prediction for Augustus_model.g22474.t1
Valid prediction for snap_scaffold_14-snap.713-T1
Valid prediction for Augustus_model.g22478.t1
Valid prediction for GlimmerHMM_glimmerT_33603-T1
Valid prediction for snap_scaffold_14-snap.731-T1
Valid prediction for Augustus_model.g22469.t1
Valid prediction for GlimmerHMM_glimmerT_33594-T1
Valid prediction for Augustus_model.g22471.t1
Valid prediction for snap_scaffold_14-snap.741-T1
Valid prediction for GlimmerHMM_glimmerT_33600-T1
Valid prediction for snap_scaffold_14-snap.750-T1
Valid prediction for snap_scaffold_14-snap.724-T1
Valid prediction for snap_scaffold_14-snap.743-T1
Valid prediction for snap_scaffold_14-snap.738-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8857, rend_intergenic: 8366  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16277, rend_intergenic: 8975  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20018, rend_intergenic: 19090  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24654, rend_intergenic: 20045  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34646, rend_intergenic: 31647  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52196, rend_intergenic: 50389  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56359, rend_intergenic: 52681  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71075, rend_intergenic: 69912  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77951, rend_intergenic: 73438  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87873, rend_intergenic: 84854  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92205, rend_intergenic: 90202  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95557, rend_intergenic: 93571  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120305, rend_intergenic: 116475  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128046, rend_intergenic: 122806  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 131166, rend_intergenic: 128282  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 142339
-exon list size: 300


building trellis

0.3    
0.7    
1.0    
1.3    
1.7    
2.0    
2.3    
2.6    
3.0    
3.3    
3.6    
4.0    
4.3    
4.6    
5.0    
5.3    
5.6    
6.0    
6.3    
6.6    
7.0    
7.3    
7.6    
7.9    
8.3    
8.6    
8.9    
9.3    
9.6    
9.9    
10.3    
10.6    
10.9    
11.3    
11.6    
11.9    
12.3    
12.6    
12.9    
13.2    
13.6    
13.9    
14.2    
14.6    
14.9    
15.2    
15.6    
15.9    
16.2    
16.6    
16.9    
17.2    
17.5    
17.9    
18.2    
18.5    
18.9    
19.2    
19.5    
19.9    
20.2    
20.5    
20.9    
21.2    
21.5    
21.9    
22.2    
22.5    
22.8    
23.2    
23.5    
23.8    
24.2    
24.5    
24.8    
25.2    
25.5    
25.8    
26.2    
26.5    
26.8    
27.2    
27.5    
27.8    
28.1    
28.5    
28.8    
29.1    
29.5    
29.8    
30.1    
30.5    
30.8    
31.1    
31.5    
31.8    
32.1    
32.5    
32.8    
33.1    
33.4    
33.8    
34.1    
34.4    
34.8    
35.1    
35.4    
35.8    
36.1    
36.4    
36.8    
37.1    
37.4    
37.7    
38.1    
38.4    
38.7    
39.1    
39.4    
39.7    
40.1    
40.4    
40.7    
41.1    
41.4    
41.7    
42.1    
42.4    
42.7    
43.0    
43.4    
43.7    
44.0    
44.4    
44.7    
45.0    
45.4    
45.7    
46.0    
46.4    
46.7    
47.0    
47.4    
47.7    
48.0    
48.3    
48.7    
49.0    
49.3    
49.7    
50.0    
50.3    
50.7    
51.0    
51.3    
51.7    
52.0    
52.3    
52.6    
53.0    
53.3    
53.6    
54.0    
54.3    
54.6    
55.0    
55.3    
55.6    
56.0    
56.3    
56.6    
57.0    
57.3    
57.6    
57.9    
58.3    
58.6    
58.9    
59.3    
59.6    
59.9    
60.3    
60.6    
60.9    
61.3    
61.6    
61.9    
62.3    
62.6    
62.9    
63.2    
63.6    
63.9    
64.2    
64.6    
64.9    
65.2    
65.6    
65.9    
66.2    
66.6    
66.9    
67.2    
67.5    
67.9    
68.2    
68.5    
68.9    
69.2    
69.5    
69.9    
70.2    
70.5    
70.9    
71.2    
71.5    
71.9    
72.2    
72.5    
72.8    
73.2    
73.5    
73.8    
74.2    
74.5    
74.8    
75.2    
75.5    
75.8    
76.2    
76.5    
76.8    
77.2    
77.5    
77.8    
78.1    
78.5    
78.8    
79.1    
79.5    
79.8    
80.1    
80.5    
80.8    
81.1    
81.5    
81.8    
82.1    
82.5    
82.8    
83.1    
83.4    
83.8    
84.1    
84.4    
84.8    
85.1    
85.4    
85.8    
86.1    
86.4    
86.8    
87.1    
87.4    
87.7    
88.1    
88.4    
88.7    
89.1    
89.4    
89.7    
90.1    
90.4    
90.7    
91.1    
91.4    
91.7    
92.1    
92.4    
92.7    
93.0    
93.4    
93.7    
94.0    
94.4    
94.7    
95.0    
95.4    
95.7    
96.0    
96.4    
96.7    
97.0    
97.4    
97.7    
98.0    
98.3    
98.7    
99.0    
99.3    
99.7    
-found 26 predictions from path traversal
Error with prediction: snap lend_intergenic: 8857, rend_intergenic: 8366  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16277, rend_intergenic: 8975  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20018, rend_intergenic: 19090  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24654, rend_intergenic: 20045  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34646, rend_intergenic: 31647  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52196, rend_intergenic: 50389  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56359, rend_intergenic: 52681  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71075, rend_intergenic: 69912  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77951, rend_intergenic: 73438  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87873, rend_intergenic: 84854  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92205, rend_intergenic: 90202  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95557, rend_intergenic: 93571  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120305, rend_intergenic: 116475  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128046, rend_intergenic: 122806  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 131166, rend_intergenic: 128282  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 17 predictions persist after filtering for low support