-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_14/scaffold_14_3816288-3960184

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_14-snap.678-T1
Valid prediction for snap_scaffold_14-snap.699-T1
Valid prediction for GlimmerHMM_glimmerT_33584-T1
Valid prediction for snap_scaffold_14-snap.681-T1
Valid prediction for snap_scaffold_14-snap.684-T1
Valid prediction for GlimmerHMM_glimmerT_33576-T1
Valid prediction for GlimmerHMM_glimmerT_33574-T1
Valid prediction for snap_scaffold_14-snap.670-T1
Valid prediction for snap_scaffold_14-snap.671-T1
Valid prediction for snap_scaffold_14-snap.682-T1
Valid prediction for Augustus_model.g22458.t1
Valid prediction for snap_scaffold_14-snap.695-T1
Valid prediction for Augustus_model.g22455.t1
Valid prediction for GlimmerHMM_glimmerT_33585-T1
Valid prediction for GlimmerHMM_glimmerT_33578-T1
Valid prediction for snap_scaffold_14-snap.705-T1
Valid prediction for GlimmerHMM_glimmerT_33583-T1
Valid prediction for Augustus_model.g22459.t1
Valid prediction for GlimmerHMM_glimmerT_33570-T1
Valid prediction for snap_scaffold_14-snap.673-T1
Valid prediction for GlimmerHMM_glimmerT_33571-T1
Valid prediction for snap_scaffold_14-snap.675-T1
Valid prediction for GlimmerHMM_glimmerT_33575-T1
Valid prediction for snap_scaffold_14-snap.697-T1
Valid prediction for GlimmerHMM_glimmerT_33582-T1
Valid prediction for snap_scaffold_14-snap.685-T1
Valid prediction for snap_scaffold_14-snap.686-T1
Valid prediction for snap_scaffold_14-snap.691-T1
Valid prediction for GlimmerHMM_glimmerT_33581-T1
Valid prediction for GlimmerHMM_glimmerT_33573-T1
Valid prediction for GlimmerHMM_glimmerT_33572-T1
Valid prediction for GlimmerHMM_glimmerT_33567-T1
Valid prediction for snap_scaffold_14-snap.693-T1
Valid prediction for GlimmerHMM_glimmerT_33580-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g22460.t1
Valid prediction for snap_scaffold_14-snap.696-T1
Valid prediction for snap_scaffold_14-snap.706-T1
Valid prediction for Augustus_model.g22462.t1
Valid prediction for snap_scaffold_14-snap.683-T1
Valid prediction for Augustus_model.g22463.t1
Valid prediction for snap_scaffold_14-snap.703-T1
Valid prediction for snap_scaffold_14-snap.692-T1
Valid prediction for snap_scaffold_14-snap.707-T1
Valid prediction for snap_scaffold_14-snap.674-T1
Valid prediction for snap_scaffold_14-snap.679-T1
Valid prediction for snap_scaffold_14-snap.704-T1
Valid prediction for snap_scaffold_14-snap.698-T1
Valid prediction for snap_scaffold_14-snap.702-T1
Valid prediction for GlimmerHMM_glimmerT_33579-T1
Valid prediction for snap_scaffold_14-snap.677-T1
Valid prediction for snap_scaffold_14-snap.690-T1
Valid prediction for Augustus_model.g22461.t1
Valid prediction for snap_scaffold_14-snap.676-T1
Valid prediction for snap_scaffold_14-snap.710-T1
Valid prediction for snap_scaffold_14-snap.701-T1
Valid prediction for snap_scaffold_14-snap.680-T1
Valid prediction for Augustus_model.g22454.t1
Valid prediction for GlimmerHMM_glimmerT_33568-T1
Valid prediction for snap_scaffold_14-snap.689-T1
Valid prediction for snap_scaffold_14-snap.687-T1
Valid prediction for Augustus_model.g22457.t1
Valid prediction for GlimmerHMM_glimmerT_33569-T1
Valid prediction for snap_scaffold_14-snap.709-T1
Valid prediction for snap_scaffold_14-snap.688-T1
Valid prediction for snap_scaffold_14-snap.672-T1
Valid prediction for Augustus_model.g22456.t1
Valid prediction for snap_scaffold_14-snap.694-T1
Valid prediction for GlimmerHMM_glimmerT_33577-T1
Valid prediction for snap_scaffold_14-snap.700-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 16610, rend_intergenic: 13092  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22794, rend_intergenic: 16624  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33324, rend_intergenic: 32384  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41830, rend_intergenic: 41674  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53150, rend_intergenic: 51117  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85020, rend_intergenic: 82582  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93379, rend_intergenic: 87277  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97383, rend_intergenic: 95140  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98767, rend_intergenic: 97707  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123524, rend_intergenic: 99281  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127784, rend_intergenic: 125291  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 143897
-exon list size: 309


building trellis

0.3    
0.6    
1.0    
1.3    
1.6    
1.9    
2.3    
2.6    
2.9    
3.2    
3.5    
3.9    
4.2    
4.5    
4.8    
5.1    
5.5    
5.8    
6.1    
6.4    
6.8    
7.1    
7.4    
7.7    
8.0    
8.4    
8.7    
9.0    
9.3    
9.6    
10.0    
10.3    
10.6    
10.9    
11.3    
11.6    
11.9    
12.2    
12.5    
12.9    
13.2    
13.5    
13.8    
14.1    
14.5    
14.8    
15.1    
15.4    
15.8    
16.1    
16.4    
16.7    
17.0    
17.4    
17.7    
18.0    
18.3    
18.6    
19.0    
19.3    
19.6    
19.9    
20.3    
20.6    
20.9    
21.2    
21.5    
21.9    
22.2    
22.5    
22.8    
23.2    
23.5    
23.8    
24.1    
24.4    
24.8    
25.1    
25.4    
25.7    
26.0    
26.4    
26.7    
27.0    
27.3    
27.7    
28.0    
28.3    
28.6    
28.9    
29.3    
29.6    
29.9    
30.2    
30.5    
30.9    
31.2    
31.5    
31.8    
32.2    
32.5    
32.8    
33.1    
33.4    
33.8    
34.1    
34.4    
34.7    
35.0    
35.4    
35.7    
36.0    
36.3    
36.7    
37.0    
37.3    
37.6    
37.9    
38.3    
38.6    
38.9    
39.2    
39.5    
39.9    
40.2    
40.5    
40.8    
41.2    
41.5    
41.8    
42.1    
42.4    
42.8    
43.1    
43.4    
43.7    
44.1    
44.4    
44.7    
45.0    
45.3    
45.7    
46.0    
46.3    
46.6    
46.9    
47.3    
47.6    
47.9    
48.2    
48.6    
48.9    
49.2    
49.5    
49.8    
50.2    
50.5    
50.8    
51.1    
51.4    
51.8    
52.1    
52.4    
52.7    
53.1    
53.4    
53.7    
54.0    
54.3    
54.7    
55.0    
55.3    
55.6    
55.9    
56.3    
56.6    
56.9    
57.2    
57.6    
57.9    
58.2    
58.5    
58.8    
59.2    
59.5    
59.8    
60.1    
60.5    
60.8    
61.1    
61.4    
61.7    
62.1    
62.4    
62.7    
63.0    
63.3    
63.7    
64.0    
64.3    
64.6    
65.0    
65.3    
65.6    
65.9    
66.2    
66.6    
66.9    
67.2    
67.5    
67.8    
68.2    
68.5    
68.8    
69.1    
69.5    
69.8    
70.1    
70.4    
70.7    
71.1    
71.4    
71.7    
72.0    
72.3    
72.7    
73.0    
73.3    
73.6    
74.0    
74.3    
74.6    
74.9    
75.2    
75.6    
75.9    
76.2    
76.5    
76.8    
77.2    
77.5    
77.8    
78.1    
78.5    
78.8    
79.1    
79.4    
79.7    
80.1    
80.4    
80.7    
81.0    
81.4    
81.7    
82.0    
82.3    
82.6    
83.0    
83.3    
83.6    
83.9    
84.2    
84.6    
84.9    
85.2    
85.5    
85.9    
86.2    
86.5    
86.8    
87.1    
87.5    
87.8    
88.1    
88.4    
88.7    
89.1    
89.4    
89.7    
90.0    
90.4    
90.7    
91.0    
91.3    
91.6    
92.0    
92.3    
92.6    
92.9    
93.2    
93.6    
93.9    
94.2    
94.5    
94.9    
95.2    
95.5    
95.8    
96.1    
96.5    
96.8    
97.1    
97.4    
97.7    
98.1    
98.4    
98.7    
99.0    
99.4    
99.7    
-found 31 predictions from path traversal
Error with prediction: snap lend_intergenic: 16610, rend_intergenic: 13092  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22794, rend_intergenic: 16624  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33324, rend_intergenic: 32384  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41830, rend_intergenic: 41674  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53150, rend_intergenic: 51117  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85020, rend_intergenic: 82582  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93379, rend_intergenic: 87277  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97383, rend_intergenic: 95140  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98767, rend_intergenic: 97707  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123524, rend_intergenic: 99281  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127784, rend_intergenic: 125291  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 20 predictions persist after filtering for low support