-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_14/scaffold_14_3496195-3618244 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for CodingQuarry_transcript_15621-T1 Valid prediction for GlimmerHMM_glimmerT_33521-T1 Valid prediction for snap_scaffold_14-snap.608-T1 Valid prediction for snap_scaffold_14-snap.599-T1 Valid prediction for snap_scaffold_14-snap.618-T1 Valid prediction for Augustus_model.g22425.t1 Valid prediction for CodingQuarry_transcript_15622-T1 Valid prediction for HiQ_model.g22428.t1 Couldn't classify 24210, 24276 Sorry, prediction pasa_asmbl_11950.p1 fails validation. (AGA) TC 24210-24276 GT AGG (CGT) AG 25940-26074 GT AGG (AGT) AG 26231-26452 GT AGG (GTG) AG 26594-26792 GT GAG (TTC) AG 27097-27268 GT CCG (GTG) AG 27501-27923 GG AGG add_exon() Sorry, pasa_asmbl_11950.p1 26231-26452-terminal-1 is invalid. -recovered pasa_asmbl_11950.p1, terminal, 26231, 26452 -recovered pasa_asmbl_11950.p1, terminal, 27501, 27923 -recovered pasa_asmbl_11950.p1, internal, 25940, 26074 -recovered pasa_asmbl_11950.p1, internal, 26231, 26452 -recovered pasa_asmbl_11950.p1, internal, 26594, 26792 -recovered pasa_asmbl_11950.p1, internal, 27097, 27268 Valid prediction for snap_scaffold_14-snap.593-T1 Valid prediction for snap_scaffold_14-snap.613-T1 Valid prediction for GlimmerHMM_glimmerT_33525-T1 Valid prediction for pasa_asmbl_11954.p1 Valid prediction for GlimmerHMM_glimmerT_33517-T1 Valid prediction for CodingQuarry_transcript_15618-T1 Valid prediction for Augustus_model.g22427.t1 Couldn't classify 9088, 9166 Couldn't classify 10245, 10364 Sorry, prediction pasa_asmbl_11948.p1 fails validation. (GGC) CG 9088-9166 GT CGG (GTC) AG 9631-9811 GT AGG (CTG) AG 9924-10050 GT CGG (AGT) AG 10245-10364 GT AGG -recovered pasa_asmbl_11948.p1, internal, 9631, 9811 -recovered pasa_asmbl_11948.p1, internal, 9924, 10050 -recovered pasa_asmbl_11948.p1, internal, 10245, 10364 Valid prediction for snap_scaffold_14-snap.604-T1 Valid prediction for CodingQuarry_transcript_15620-T1 Valid prediction for GlimmerHMM_glimmerT_33528-T1 Valid prediction for GlimmerHMM_glimmerT_33518-T1 Valid prediction for snap_scaffold_14-snap.606-T1 Valid prediction for Augustus_model.g22431.t1 Valid prediction for GlimmerHMM_glimmerT_33527-T1 Valid prediction for snap_scaffold_14-snap.609-T1 Valid prediction for snap_scaffold_14-snap.605-T1 Valid prediction for snap_scaffold_14-snap.594-T1 Valid prediction for Augustus_model.g22432.t1 Valid prediction for snap_scaffold_14-snap.603-T1 Couldn't classify 94282, 94375 Sorry, prediction pasa_asmbl_11957.p1 fails validation. (GGT) AA 94282-94375 GT CTG (ACG) AG 94830-94994 GT ATG (TCA) AG 95219-95424 AG AGA -recovered pasa_asmbl_11957.p1, terminal, 95219, 95424 -recovered pasa_asmbl_11957.p1, internal, 94830, 94994 Valid prediction for snap_scaffold_14-snap.589-T1 Valid prediction for snap_scaffold_14-snap.610-T1 Couldn't classify 16029, 16200 Couldn't classify 19956, 20127 Sorry, prediction pasa_asmbl_11949.p1 fails validation. (GTG) TG 16029-16200 GT AGG (GGT) AG 17046-17188 GT TGG (GCC) AG 18225-18415 GT GGG (TGA) AG 19956-20127 TA TCT -recovered pasa_asmbl_11949.p1, internal, 17046, 17188 -recovered pasa_asmbl_11949.p1, internal, 18225, 18415 Valid prediction for snap_scaffold_14-snap.614-T1 Sorry, intron length (3) is less than minimum required (10) Valid prediction for snap_scaffold_14-snap.596-T1 Valid prediction for snap_scaffold_14-snap.615-T1 Valid prediction for CodingQuarry_transcript_15617-T1 Valid prediction for snap_scaffold_14-snap.592-T1 Valid prediction for Augustus_model.g22422.t1 Valid prediction for snap_scaffold_14-snap.607-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_33522-T1 Valid prediction for Augustus_model.g22424.t1 Valid prediction for Augustus_model.g22423.t1 Couldn't classify 71441, 71815 Sorry, prediction pasa_asmbl_13019.p1 fails validation. (GAC) GA 71441-71815 AA AGA Valid prediction for GlimmerHMM_glimmerT_33526-T1 Valid prediction for snap_scaffold_14-snap.612-T1 Valid prediction for snap_scaffold_14-snap.597-T1 Valid prediction for snap_scaffold_14-snap.616-T1 Valid prediction for snap_scaffold_14-snap.601-T1 Valid prediction for snap_scaffold_14-snap.595-T1 Valid prediction for GlimmerHMM_glimmerT_33523-T1 Valid prediction for snap_scaffold_14-snap.602-T1 Valid prediction for Augustus_model.g22429.t1 Valid prediction for GlimmerHMM_glimmerT_33519-T1 Valid prediction for snap_scaffold_14-snap.591-T1 Valid prediction for Augustus_model.g22430.t1 Valid prediction for snap_scaffold_14-snap.617-T1 Valid prediction for Augustus_model.g22426.t1 Valid prediction for GlimmerHMM_glimmerT_33520-T1 Valid prediction for snap_scaffold_14-snap.611-T1 Valid prediction for GlimmerHMM_glimmerT_33524-T1 Valid prediction for pasa_asmbl_13022.p1 Valid prediction for snap_scaffold_14-snap.598-T1 Valid prediction for snap_scaffold_14-snap.600-T1 Valid prediction for snap_scaffold_14-snap.590-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 27923, rend_intergenic: 8161 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 39434, rend_intergenic: 33827 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 57746, rend_intergenic: 54473 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 79056, rend_intergenic: 66666 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 105090, rend_intergenic: 101955 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 114495, rend_intergenic: 110077 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 117690, rend_intergenic: 115261 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 122050 -exon list size: 304 building trellis 0.3 0.7 1.0 1.3 1.6 2.0 2.3 2.6 2.9 3.3 3.6 3.9 4.2 4.6 4.9 5.2 5.6 5.9 6.2 6.5 6.9 7.2 7.5 7.8 8.2 8.5 8.8 9.2 9.5 9.8 10.1 10.5 10.8 11.1 11.4 11.8 12.1 12.4 12.7 13.1 13.4 13.7 14.1 14.4 14.7 15.0 15.4 15.7 16.0 16.3 16.7 17.0 17.3 17.6 18.0 18.3 18.6 19.0 19.3 19.6 19.9 20.3 20.6 20.9 21.2 21.6 21.9 22.2 22.5 22.9 23.2 23.5 23.9 24.2 24.5 24.8 25.2 25.5 25.8 26.1 26.5 26.8 27.1 27.5 27.8 28.1 28.4 28.8 29.1 29.4 29.7 30.1 30.4 30.7 31.0 31.4 31.7 32.0 32.4 32.7 33.0 33.3 33.7 34.0 34.3 34.6 35.0 35.3 35.6 35.9 36.3 36.6 36.9 37.3 37.6 37.9 38.2 38.6 38.9 39.2 39.5 39.9 40.2 40.5 40.8 41.2 41.5 41.8 42.2 42.5 42.8 43.1 43.5 43.8 44.1 44.4 44.8 45.1 45.4 45.8 46.1 46.4 46.7 47.1 47.4 47.7 48.0 48.4 48.7 49.0 49.3 49.7 50.0 50.3 50.7 51.0 51.3 51.6 52.0 52.3 52.6 52.9 53.3 53.6 53.9 54.2 54.6 54.9 55.2 55.6 55.9 56.2 56.5 56.9 57.2 57.5 57.8 58.2 58.5 58.8 59.2 59.5 59.8 60.1 60.5 60.8 61.1 61.4 61.8 62.1 62.4 62.7 63.1 63.4 63.7 64.1 64.4 64.7 65.0 65.4 65.7 66.0 66.3 66.7 67.0 67.3 67.6 68.0 68.3 68.6 69.0 69.3 69.6 69.9 70.3 70.6 70.9 71.2 71.6 71.9 72.2 72.5 72.9 73.2 73.5 73.9 74.2 74.5 74.8 75.2 75.5 75.8 76.1 76.5 76.8 77.1 77.5 77.8 78.1 78.4 78.8 79.1 79.4 79.7 80.1 80.4 80.7 81.0 81.4 81.7 82.0 82.4 82.7 83.0 83.3 83.7 84.0 84.3 84.6 85.0 85.3 85.6 85.9 86.3 86.6 86.9 87.3 87.6 87.9 88.2 88.6 88.9 89.2 89.5 89.9 90.2 90.5 90.8 91.2 91.5 91.8 92.2 92.5 92.8 93.1 93.5 93.8 94.1 94.4 94.8 95.1 95.4 95.8 96.1 96.4 96.7 97.1 97.4 97.7 98.0 98.4 98.7 99.0 99.3 99.7 -found 15 predictions from path traversal Error with prediction: snap lend_intergenic: 27923, rend_intergenic: 8161 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 39434, rend_intergenic: 33827 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 57746, rend_intergenic: 54473 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 79056, rend_intergenic: 66666 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 105090, rend_intergenic: 101955 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 114495, rend_intergenic: 110077 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 117690, rend_intergenic: 115261 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 12 predictions persist after filtering for low support