-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_14/scaffold_14_1876960-2046513

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_14-snap.322-T1
Valid prediction for snap_scaffold_14-snap.314-T1
Valid prediction for snap_scaffold_14-snap.312-T1
Couldn't classify 123233, 123592
Sorry, prediction pasa_asmbl_11844.p2 fails validation.
(CTC)	 AC	123233-123592	GG	GAG
Valid prediction for GlimmerHMM_glimmerT_33339-T1
Valid prediction for snap_scaffold_14-snap.303-T1
Valid prediction for snap_scaffold_14-snap.323-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for snap_scaffold_14-snap.309-T1
Valid prediction for GlimmerHMM_glimmerT_33345-T1
Valid prediction for snap_scaffold_14-snap.321-T1
Couldn't classify 79526, 79566
Couldn't classify 86485, 86565
Sorry, prediction pasa_asmbl_11841.p1 fails validation.
(CCC)	 CA	79526-79566	GT	AGG
(CTT)	 AG	81747-81831	GT	CGG
(AAC)	 AG	82974-83060	GT	CGG
(GAA)	 AG	85039-85215	GC	AGG
(GCC)	 AG	86485-86565	CA	GGC
-recovered pasa_asmbl_11841.p1, internal, 81747, 81831
-recovered pasa_asmbl_11841.p1, internal, 82974, 83060
-recovered pasa_asmbl_11841.p1, internal, 85039, 85215
Valid prediction for GlimmerHMM_glimmerT_33340-T1
Valid prediction for snap_scaffold_14-snap.304-T1
Valid prediction for Augustus_model.g22299.t1
Valid prediction for snap_scaffold_14-snap.310-T1
Valid prediction for Augustus_model.g22300.t1
Valid prediction for snap_scaffold_14-snap.319-T1
Valid prediction for Augustus_model.g22297.t1
Valid prediction for snap_scaffold_14-snap.311-T1
Valid prediction for GlimmerHMM_glimmerT_33332-T1
Valid prediction for Augustus_model.g22294.t1
Valid prediction for Augustus_model.g22293.t1
Valid prediction for Augustus_model.g22289.t1
Valid prediction for GlimmerHMM_glimmerT_33330-T1
Valid prediction for snap_scaffold_14-snap.308-T1
Valid prediction for Augustus_model.g22296.t1
Couldn't classify 91829, 91966
Sorry, prediction pasa_asmbl_11842.p1 fails validation.
(ATC)	 AG	91829-91966	GT	TGG
(CCG)	 AG	93260-93402	GT	GGG
(TTT)	 AG	93964-94162	GT	CGG
(ATC)	 AG	95424-95589	GT	CAG
(CTC)	 AG	95808-95953	GT	GGG
(CCT)	 AG	96690-96785	GC	GAG
-recovered pasa_asmbl_11842.p1, terminal, 96690, 96785
-recovered pasa_asmbl_11842.p1, internal, 91829, 91966
-recovered pasa_asmbl_11842.p1, internal, 93260, 93402
-recovered pasa_asmbl_11842.p1, internal, 93964, 94162
-recovered pasa_asmbl_11842.p1, internal, 95424, 95589
-recovered pasa_asmbl_11842.p1, internal, 95808, 95953
-recovered pasa_asmbl_11842.p1, internal, 96690, 96785
Couldn't classify 65150, 65207
Couldn't classify 69659, 69707
Sorry, prediction pasa_asmbl_11838.p1 fails validation.
(TAC)	 GG	65150-65207	GT	AGG
(GTC)	 AG	66428-66576	GT	TGG
(TTT)	 AG	67764-67849	GT	ATG
(TCT)	 AG	68224-68380	GT	TGG
(AAC)	 AG	69314-69354	GT	AGG
(GTA)	 AG	69659-69707	GA	CAG
-recovered pasa_asmbl_11838.p1, internal, 66428, 66576
-recovered pasa_asmbl_11838.p1, internal, 67764, 67849
-recovered pasa_asmbl_11838.p1, internal, 68224, 68380
-recovered pasa_asmbl_11838.p1, internal, 69314, 69354
Valid prediction for GlimmerHMM_glimmerT_33335-T1
Valid prediction for GlimmerHMM_glimmerT_33333-T1
Valid prediction for GlimmerHMM_glimmerT_33347-T1
Valid prediction for Augustus_model.g22295.t1
Valid prediction for GlimmerHMM_glimmerT_33344-T1
Valid prediction for snap_scaffold_14-snap.324-T1
Valid prediction for snap_scaffold_14-snap.317-T1
Valid prediction for snap_scaffold_14-snap.313-T1
Valid prediction for snap_scaffold_14-snap.301-T1
Valid prediction for GlimmerHMM_glimmerT_33343-T1
Valid prediction for GlimmerHMM_glimmerT_33336-T1
Valid prediction for GlimmerHMM_glimmerT_33342-T1
Valid prediction for GlimmerHMM_glimmerT_33341-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_33328-T1
Valid prediction for Augustus_model.g22288.t1
Valid prediction for snap_scaffold_14-snap.315-T1
Valid prediction for snap_scaffold_14-snap.307-T1
Valid prediction for snap_scaffold_14-snap.325-T1
Valid prediction for snap_scaffold_14-snap.305-T1
Valid prediction for snap_scaffold_14-snap.318-T1
Valid prediction for GlimmerHMM_glimmerT_33346-T1
Valid prediction for snap_scaffold_14-snap.302-T1
Valid prediction for Augustus_model.g22287.t1
Valid prediction for GlimmerHMM_glimmerT_33331-T1
Valid prediction for GlimmerHMM_glimmerT_33334-T1
Valid prediction for snap_scaffold_14-snap.320-T1
Valid prediction for snap_scaffold_14-snap.306-T1
Valid prediction for Augustus_model.g22292.t1
Valid prediction for Augustus_model.g22286.t1
Valid prediction for GlimmerHMM_glimmerT_33337-T1
Valid prediction for Augustus_model.g22290.t1
Valid prediction for Augustus_model.g22291.t1
Valid prediction for GlimmerHMM_glimmerT_33338-T1
Valid prediction for snap_scaffold_14-snap.316-T1
Valid prediction for Augustus_model.g22301.t1
Valid prediction for GlimmerHMM_glimmerT_33329-T1
Valid prediction for Augustus_model.g22298.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 25510, rend_intergenic: 21710  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36961, rend_intergenic: 35261  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92458, rend_intergenic: 82255  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97374, rend_intergenic: 94423  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 169554
-exon list size: 214


building trellis

0.5    
0.9    
1.4    
1.9    
2.3    
2.8    
3.2    
3.7    
4.2    
4.6    
5.1    
5.6    
6.0    
6.5    
6.9    
7.4    
7.9    
8.3    
8.8    
9.3    
9.7    
10.2    
10.6    
11.1    
11.6    
12.0    
12.5    
13.0    
13.4    
13.9    
14.4    
14.8    
15.3    
15.7    
16.2    
16.7    
17.1    
17.6    
18.1    
18.5    
19.0    
19.4    
19.9    
20.4    
20.8    
21.3    
21.8    
22.2    
22.7    
23.1    
23.6    
24.1    
24.5    
25.0    
25.5    
25.9    
26.4    
26.9    
27.3    
27.8    
28.2    
28.7    
29.2    
29.6    
30.1    
30.6    
31.0    
31.5    
31.9    
32.4    
32.9    
33.3    
33.8    
34.3    
34.7    
35.2    
35.6    
36.1    
36.6    
37.0    
37.5    
38.0    
38.4    
38.9    
39.4    
39.8    
40.3    
40.7    
41.2    
41.7    
42.1    
42.6    
43.1    
43.5    
44.0    
44.4    
44.9    
45.4    
45.8    
46.3    
46.8    
47.2    
47.7    
48.1    
48.6    
49.1    
49.5    
50.0    
50.5    
50.9    
51.4    
51.9    
52.3    
52.8    
53.2    
53.7    
54.2    
54.6    
55.1    
55.6    
56.0    
56.5    
56.9    
57.4    
57.9    
58.3    
58.8    
59.3    
59.7    
60.2    
60.6    
61.1    
61.6    
62.0    
62.5    
63.0    
63.4    
63.9    
64.4    
64.8    
65.3    
65.7    
66.2    
66.7    
67.1    
67.6    
68.1    
68.5    
69.0    
69.4    
69.9    
70.4    
70.8    
71.3    
71.8    
72.2    
72.7    
73.1    
73.6    
74.1    
74.5    
75.0    
75.5    
75.9    
76.4    
76.9    
77.3    
77.8    
78.2    
78.7    
79.2    
79.6    
80.1    
80.6    
81.0    
81.5    
81.9    
82.4    
82.9    
83.3    
83.8    
84.3    
84.7    
85.2    
85.6    
86.1    
86.6    
87.0    
87.5    
88.0    
88.4    
88.9    
89.4    
89.8    
90.3    
90.7    
91.2    
91.7    
92.1    
92.6    
93.1    
93.5    
94.0    
94.4    
94.9    
95.4    
95.8    
96.3    
96.8    
97.2    
97.7    
98.1    
98.6    
99.1    
99.5    
-found 21 predictions from path traversal
Error with prediction: snap lend_intergenic: 25510, rend_intergenic: 21710  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36961, rend_intergenic: 35261  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92458, rend_intergenic: 82255  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97374, rend_intergenic: 94423  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 16 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 152999 - 169554
-exon list size: 2


building trellis

25.0    
50.0    
75.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 152999 - 165960
-exon list size: 1


building trellis

33.3    
66.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support
	-no exons in range 155864 - 165960