-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_14/scaffold_14_15420032-15562815

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_35289-T1
Valid prediction for GlimmerHMM_glimmerT_35286-T1
Valid prediction for snap_scaffold_14-snap.3200-T1
Valid prediction for snap_scaffold_14-snap.3202-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for Augustus_model.g23599.t1
Valid prediction for snap_scaffold_14-snap.3232-T1
Valid prediction for GlimmerHMM_glimmerT_35275-T1
Valid prediction for GlimmerHMM_glimmerT_35288-T1
Valid prediction for GlimmerHMM_glimmerT_35294-T1
Valid prediction for CodingQuarry_transcript_15953-T1
Valid prediction for GlimmerHMM_glimmerT_35285-T1
Valid prediction for GlimmerHMM_glimmerT_35291-T1
Valid prediction for CodingQuarry_transcript_15956-T1
Valid prediction for Augustus_model.g23586.t1
Valid prediction for snap_scaffold_14-snap.3217-T1
Valid prediction for GlimmerHMM_glimmerT_35283-T1
Valid prediction for Augustus_model.g23590.t1
Valid prediction for snap_scaffold_14-snap.3214-T1
Valid prediction for GlimmerHMM_glimmerT_35287-T1
Couldn't classify 93437, 93466
Couldn't classify 94381, 94791
Sorry, prediction pasa_asmbl_12612.p1 fails validation.
(CGA)	 CC	93437-93466	GT	AGG
(AAC)	 AG	93843-94016	GT	GGG
(AGC)	 AG	94381-94791	AC	GTA
-recovered pasa_asmbl_12612.p1, internal, 93843, 94016
Valid prediction for snap_scaffold_14-snap.3205-T1
Valid prediction for snap_scaffold_14-snap.3215-T1
Valid prediction for HiQ_model.g23596.t1
Valid prediction for snap_scaffold_14-snap.3197-T1
Valid prediction for pasa_asmbl_12595.p1
Couldn't classify 90250, 90387
Couldn't classify 91174, 91233
Sorry, prediction pasa_asmbl_12610.p1 fails validation.
(CCA)	 GA	90250-90387	GT	AGG
(CTG)	 AG	90649-90771	GT	AGG
(GGG)	 AG	91174-91233	GA	GAG
-recovered pasa_asmbl_12610.p1, internal, 90649, 90771
Valid prediction for Augustus_model.g23595.t1
Valid prediction for snap_scaffold_14-snap.3220-T1
Valid prediction for GlimmerHMM_glimmerT_35280-T1
Valid prediction for snap_scaffold_14-snap.3212-T1
Valid prediction for snap_scaffold_14-snap.3204-T1
Valid prediction for snap_scaffold_14-snap.3196-T1
Valid prediction for pasa_asmbl_12599.p1
Valid prediction for CodingQuarry_transcript_15951-T1
Valid prediction for GlimmerHMM_glimmerT_35297-T1
Valid prediction for snap_scaffold_14-snap.3211-T1
Valid prediction for CodingQuarry_transcript_15954-T1
Valid prediction for GlimmerHMM_glimmerT_35277-T1
Valid prediction for GlimmerHMM_glimmerT_35290-T1
Valid prediction for GlimmerHMM_glimmerT_35301-T1
Valid prediction for snap_scaffold_14-snap.3227-T1
Valid prediction for snap_scaffold_14-snap.3209-T1
Valid prediction for pasa_asmbl_12594.p1
Valid prediction for Augustus_model.g23597.t1
Valid prediction for GlimmerHMM_glimmerT_35296-T1
Valid prediction for Augustus_model.g23593.t1
Valid prediction for CodingQuarry_transcript_15952-T1
Valid prediction for pasa_asmbl_12615.p1
Couldn't classify 71413, 71784
Sorry, prediction pasa_asmbl_12609.p1 fails validation.
(ACG)	 NN	71413-71784	GA	GAG
Valid prediction for Augustus_model.g23592.t1
Valid prediction for snap_scaffold_14-snap.3218-T1
Valid prediction for snap_scaffold_14-snap.3206-T1
Valid prediction for GlimmerHMM_glimmerT_35293-T1
Valid prediction for GlimmerHMM_glimmerT_35295-T1
Valid prediction for HiQ_model.g23591.t1
Valid prediction for pasa_asmbl_12607.p1
Valid prediction for GlimmerHMM_glimmerT_35299-T1
Valid prediction for snap_scaffold_14-snap.3208-T1
Valid prediction for CodingQuarry_transcript_15957-T1
Valid prediction for pasa_asmbl_12600.p1
Valid prediction for Augustus_model.g23594.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_14-snap.3199-T1
Valid prediction for snap_scaffold_14-snap.3233-T1
Valid prediction for snap_scaffold_14-snap.3229-T1
Valid prediction for Augustus_model.g23588.t1
Valid prediction for pasa_asmbl_13726.p3
Valid prediction for CodingQuarry_transcript_15950-T1
Valid prediction for GlimmerHMM_glimmerT_35298-T1
Valid prediction for snap_scaffold_14-snap.3223-T1
Valid prediction for snap_scaffold_14-snap.3195-T1
Valid prediction for GlimmerHMM_glimmerT_35281-T1
Couldn't classify 37837, 37913
Couldn't classify 40650, 40760
Sorry, prediction pasa_asmbl_13731.p1 fails validation.
(GTT)	 CT	37837-37913	GT	AGG
(TGC)	 AG	38207-38290	GT	AGG
(AGT)	 AG	38414-38492	GT	AGG
(GTT)	 AG	38580-38678	GT	AGG
(ATT)	 AG	39342-39422	GT	TGG
(GAC)	 AG	39629-39739	GT	AGG
(ATC)	 AG	39995-40108	GT	AGG
(ATA)	 AG	40650-40760	GT	AGG
-recovered pasa_asmbl_13731.p1, internal, 38207, 38290
-recovered pasa_asmbl_13731.p1, internal, 38414, 38492
-recovered pasa_asmbl_13731.p1, internal, 38580, 38678
-recovered pasa_asmbl_13731.p1, internal, 39342, 39422
-recovered pasa_asmbl_13731.p1, internal, 39629, 39739
-recovered pasa_asmbl_13731.p1, internal, 39995, 40108
-recovered pasa_asmbl_13731.p1, internal, 40650, 40760
Valid prediction for GlimmerHMM_glimmerT_35278-T1
Valid prediction for snap_scaffold_14-snap.3198-T1
Valid prediction for snap_scaffold_14-snap.3222-T1
Valid prediction for GlimmerHMM_glimmerT_35279-T1
Valid prediction for snap_scaffold_14-snap.3230-T1
Valid prediction for snap_scaffold_14-snap.3203-T1
Valid prediction for Augustus_model.g23600.t1
Couldn't classify 34821, 34977
Sorry, prediction pasa_asmbl_13732.p1 fails validation.
(ATG)	 CC	32456-32581	GT	AGG
(ATT)	 AG	32747-32887	GT	AGG
(AAA)	 AG	33047-33259	GT	AGG
(AGA)	 AG	33400-33533	GT	AGG
(GTC)	 AG	34821-34977	CT	GAC
-recovered pasa_asmbl_13732.p1, initial, 32456, 32581
-recovered pasa_asmbl_13732.p1, internal, 32747, 32887
-recovered pasa_asmbl_13732.p1, internal, 33047, 33259
-recovered pasa_asmbl_13732.p1, internal, 33400, 33533
Valid prediction for snap_scaffold_14-snap.3213-T1
Valid prediction for GlimmerHMM_glimmerT_35282-T1
Valid prediction for GlimmerHMM_glimmerT_35300-T1
Valid prediction for snap_scaffold_14-snap.3231-T1
Valid prediction for snap_scaffold_14-snap.3228-T1
Valid prediction for snap_scaffold_14-snap.3216-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_35284-T1
Valid prediction for snap_scaffold_14-snap.3207-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for HiQ_model.g23589.t1
Valid prediction for snap_scaffold_14-snap.3221-T1
Valid prediction for GlimmerHMM_glimmerT_35292-T1
Valid prediction for snap_scaffold_14-snap.3225-T1
Valid prediction for Augustus_model.g23598.t1
Valid prediction for GlimmerHMM_glimmerT_35276-T1
Valid prediction for snap_scaffold_14-snap.3219-T1
Valid prediction for snap_scaffold_14-snap.3210-T1
Valid prediction for snap_scaffold_14-snap.3224-T1
Valid prediction for snap_scaffold_14-snap.3201-T1
Valid prediction for Augustus_model.g23587.t1
Valid prediction for snap_scaffold_14-snap.3226-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3795, rend_intergenic: 2100  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9132, rend_intergenic: 8320  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19930, rend_intergenic: 19763  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25329, rend_intergenic: 20549  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29420, rend_intergenic: 27937  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32355, rend_intergenic: 29872  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40887, rend_intergenic: 39569  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57283, rend_intergenic: 54903  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69637, rend_intergenic: 66153  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72125, rend_intergenic: 70116  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78995, rend_intergenic: 75784  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86038, rend_intergenic: 79154  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97410, rend_intergenic: 86064  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125809, rend_intergenic: 118895  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141604, rend_intergenic: 136355  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 142784
-exon list size: 359


building trellis

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1.1    
1.4    
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1.9    
2.2    
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2.8    
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3.9    
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11.9    
12.2    
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14.4    
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27.4    
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28.3    
28.5    
28.8    
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29.6    
29.9    
30.2    
30.5    
30.7    
31.0    
31.3    
31.6    
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32.4    
32.7    
33.0    
33.2    
33.5    
33.8    
34.1    
34.3    
34.6    
34.9    
35.2    
35.5    
35.7    
36.0    
36.3    
36.6    
36.8    
37.1    
37.4    
37.7    
38.0    
38.2    
38.5    
38.8    
39.1    
39.3    
39.6    
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40.2    
40.4    
40.7    
41.0    
41.3    
41.6    
41.8    
42.1    
42.4    
42.7    
42.9    
43.2    
43.5    
43.8    
44.0    
44.3    
44.6    
44.9    
45.2    
45.4    
45.7    
46.0    
46.3    
46.5    
46.8    
47.1    
47.4    
47.6    
47.9    
48.2    
48.5    
48.8    
49.0    
49.3    
49.6    
49.9    
50.1    
50.4    
50.7    
51.0    
51.2    
51.5    
51.8    
52.1    
52.4    
52.6    
52.9    
53.2    
53.5    
53.7    
54.0    
54.3    
54.6    
54.8    
55.1    
55.4    
55.7    
56.0    
56.2    
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57.1    
57.3    
57.6    
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58.2    
58.4    
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59.3    
59.6    
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60.1    
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61.2    
61.5    
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64.0    
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65.1    
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66.2    
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67.0    
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67.6    
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69.3    
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79.2    
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80.1    
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80.6    
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81.2    
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81.7    
82.0    
82.3    
82.5    
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83.1    
83.4    
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84.8    
85.0    
85.3    
85.6    
85.9    
86.1    
86.4    
86.7    
87.0    
87.3    
87.5    
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88.1    
88.4    
88.6    
88.9    
89.2    
89.5    
89.8    
90.0    
90.3    
90.6    
90.9    
91.1    
91.4    
91.7    
92.0    
92.2    
92.5    
92.8    
93.1    
93.4    
93.6    
93.9    
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94.5    
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96.1    
96.4    
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97.0    
97.2    
97.5    
97.8    
98.1    
98.3    
98.6    
98.9    
99.2    
99.4    
99.7    
-found 26 predictions from path traversal
Error with prediction: snap lend_intergenic: 3795, rend_intergenic: 2100  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9132, rend_intergenic: 8320  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19930, rend_intergenic: 19763  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25329, rend_intergenic: 20549  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29420, rend_intergenic: 27937  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32355, rend_intergenic: 29872  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40887, rend_intergenic: 39569  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57283, rend_intergenic: 54903  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69637, rend_intergenic: 66153  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72125, rend_intergenic: 70116  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78995, rend_intergenic: 75784  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86038, rend_intergenic: 79154  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97410, rend_intergenic: 86064  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125809, rend_intergenic: 118895  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141604, rend_intergenic: 136355  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 20 predictions persist after filtering for low support